Assay Summary H3K79me1 Summary Track Settings
 
Roadmap Epigenome H3K79me1 Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF003KAW_H9  ENCFF003KAW H9 by ChIP-seq    Data format 
     ENCFF005PXZ_IMR-90  ENCFF005PXZ IMR-90 by ChIP-seq    Data format 
     ENCFF006MBC_neuronal_stem_cell  ENCFF006MBC neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF024LSL_H9  ENCFF024LSL H9 by ChIP-seq    Data format 
     ENCFF031NZC_trophoblast_cell  ENCFF031NZC trophoblast_cell by ChIP-seq    Data format 
     ENCFF047GXT_H9  ENCFF047GXT H9 by ChIP-seq    Data format 
     ENCFF049TRD_IMR-90  ENCFF049TRD IMR-90 by ChIP-seq    Data format 
     ENCFF052ZNS_H9  ENCFF052ZNS H9 by ChIP-seq    Data format 
     ENCFF057CJH_trophoblast_cell  ENCFF057CJH trophoblast_cell by ChIP-seq    Data format 
     ENCFF079YZC_H9  ENCFF079YZC H9 by ChIP-seq    Data format 
     ENCFF093FDG_trophoblast_cell  ENCFF093FDG trophoblast_cell by ChIP-seq    Data format 
     ENCFF115RBP_H1  ENCFF115RBP H1 by ChIP-seq    Data format 
     ENCFF119QIT_mesendoderm  ENCFF119QIT mesendoderm by ChIP-seq    Data format 
     ENCFF162XGE_mesenchymal_stem_cell  ENCFF162XGE mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF184XNO_IMR-90  ENCFF184XNO IMR-90 by ChIP-seq    Data format 
     ENCFF187FRA_mesendoderm  ENCFF187FRA mesendoderm by ChIP-seq    Data format 
     ENCFF194IBK_mesendoderm  ENCFF194IBK mesendoderm by ChIP-seq    Data format 
     ENCFF240FDY_mesendoderm  ENCFF240FDY mesendoderm by ChIP-seq    Data format 
     ENCFF248BGE_H9  ENCFF248BGE H9 by ChIP-seq    Data format 
     ENCFF257DTH_IMR-90  ENCFF257DTH IMR-90 by ChIP-seq    Data format 
     ENCFF261MYJ_H1  ENCFF261MYJ H1 by ChIP-seq    Data format 
     ENCFF285UKX_IMR-90  ENCFF285UKX IMR-90 by ChIP-seq    Data format 
     ENCFF309NHA_IMR-90  ENCFF309NHA IMR-90 by ChIP-seq    Data format 
     ENCFF333EGO_mesendoderm  ENCFF333EGO mesendoderm by ChIP-seq    Data format 
     ENCFF334JCJ_H9  ENCFF334JCJ H9 by ChIP-seq    Data format 
     ENCFF337BEC_H9  ENCFF337BEC H9 by ChIP-seq    Data format 
     ENCFF349YSW_H1  ENCFF349YSW H1 by ChIP-seq    Data format 
     ENCFF352KAK_neuronal_stem_cell  ENCFF352KAK neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF363LML_IMR-90  ENCFF363LML IMR-90 by ChIP-seq    Data format 
     ENCFF391TUR_H9  ENCFF391TUR H9 by ChIP-seq    Data format 
     ENCFF392IKX_mesenchymal_stem_cell  ENCFF392IKX mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF411BWN_mesendoderm  ENCFF411BWN mesendoderm by ChIP-seq    Data format 
     ENCFF437LWG_H1  ENCFF437LWG H1 by ChIP-seq    Data format 
     ENCFF437VOS_mesendoderm  ENCFF437VOS mesendoderm by ChIP-seq    Data format 
     ENCFF442TXW_mesenchymal_stem_cell  ENCFF442TXW mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF444EZZ_H9  ENCFF444EZZ H9 by ChIP-seq    Data format 
     ENCFF446DWY_H1  ENCFF446DWY H1 by ChIP-seq    Data format 
     ENCFF446OUD_mesenchymal_stem_cell  ENCFF446OUD mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF447NIU_mesenchymal_stem_cell  ENCFF447NIU mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF455IYV_IMR-90  ENCFF455IYV IMR-90 by ChIP-seq    Data format 
     ENCFF456KRT_mesenchymal_stem_cell  ENCFF456KRT mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF462KJC_mesendoderm  ENCFF462KJC mesendoderm by ChIP-seq    Data format 
     ENCFF462SXZ_mesendoderm  ENCFF462SXZ mesendoderm by ChIP-seq    Data format 
     ENCFF465TGW_H1  ENCFF465TGW H1 by ChIP-seq    Data format 
     ENCFF475SUV_neuronal_stem_cell  ENCFF475SUV neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF485WPL_mesenchymal_stem_cell  ENCFF485WPL mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF523MUU_IMR-90  ENCFF523MUU IMR-90 by ChIP-seq    Data format 
     ENCFF529ZRW_IMR-90  ENCFF529ZRW IMR-90 by ChIP-seq    Data format 
     ENCFF548AYD_IMR-90  ENCFF548AYD IMR-90 by ChIP-seq    Data format 
     ENCFF572YFM_neuronal_stem_cell  ENCFF572YFM neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF585VWJ_IMR-90  ENCFF585VWJ IMR-90 by ChIP-seq    Data format 
     ENCFF609YPN_H1  ENCFF609YPN H1 by ChIP-seq    Data format 
     ENCFF615RIM_IMR-90  ENCFF615RIM IMR-90 by ChIP-seq    Data format 
     ENCFF647SVN_mesenchymal_stem_cell  ENCFF647SVN mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF658MBX_IMR-90  ENCFF658MBX IMR-90 by ChIP-seq    Data format 
     ENCFF685RZK_H1  ENCFF685RZK H1 by ChIP-seq    Data format 
     ENCFF689QGV_IMR-90  ENCFF689QGV IMR-90 by ChIP-seq    Data format 
     ENCFF695EEB_IMR-90  ENCFF695EEB IMR-90 by ChIP-seq    Data format 
     ENCFF695MGL_mesendoderm  ENCFF695MGL mesendoderm by ChIP-seq    Data format 
     ENCFF717VRE_IMR-90  ENCFF717VRE IMR-90 by ChIP-seq    Data format 
     ENCFF721XHN_IMR-90  ENCFF721XHN IMR-90 by ChIP-seq    Data format 
     ENCFF725ZHN_H9  ENCFF725ZHN H9 by ChIP-seq    Data format 
     ENCFF743QDE_H9  ENCFF743QDE H9 by ChIP-seq    Data format 
     ENCFF768YYH_mesendoderm  ENCFF768YYH mesendoderm by ChIP-seq    Data format 
     ENCFF785VKI_IMR-90  ENCFF785VKI IMR-90 by ChIP-seq    Data format 
     ENCFF805KFX_H1  ENCFF805KFX H1 by ChIP-seq    Data format 
     ENCFF826TWN_IMR-90  ENCFF826TWN IMR-90 by ChIP-seq    Data format 
     ENCFF847WDL_mesenchymal_stem_cell  ENCFF847WDL mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF854YJV_mesenchymal_stem_cell  ENCFF854YJV mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF861SBJ_mesenchymal_stem_cell  ENCFF861SBJ mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF868LSK_mesendoderm  ENCFF868LSK mesendoderm by ChIP-seq    Data format 
     ENCFF885HXZ_IMR-90  ENCFF885HXZ IMR-90 by ChIP-seq    Data format 
     ENCFF898YQX_mesenchymal_stem_cell  ENCFF898YQX mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF905DKO_IMR-90  ENCFF905DKO IMR-90 by ChIP-seq    Data format 
     ENCFF916MEU_IMR-90  ENCFF916MEU IMR-90 by ChIP-seq    Data format 
     ENCFF940RZG_H1  ENCFF940RZG H1 by ChIP-seq    Data format 
     ENCFF944ROK_H1  ENCFF944ROK H1 by ChIP-seq    Data format 
     ENCFF947GJL_IMR-90  ENCFF947GJL IMR-90 by ChIP-seq    Data format 
     ENCFF955NRR_H1  ENCFF955NRR H1 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF