Assay Summary H3K9me1 Summary Track Settings
 
Roadmap Epigenome H3K9me1 Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF142XMI_IMR-90  ENCFF142XMI IMR-90 by ChIP-seq    Data format 
     ENCFF164FXG_IMR-90  ENCFF164FXG IMR-90 by ChIP-seq    Data format 
     ENCFF237CXP_IMR-90  ENCFF237CXP IMR-90 by ChIP-seq    Data format 
     ENCFF246VBD_IMR-90  ENCFF246VBD IMR-90 by ChIP-seq    Data format 
     ENCFF449HQP_IMR-90  ENCFF449HQP IMR-90 by ChIP-seq    Data format 
     ENCFF479WCL_IMR-90  ENCFF479WCL IMR-90 by ChIP-seq    Data format 
     ENCFF484EAR_IMR-90  ENCFF484EAR IMR-90 by ChIP-seq    Data format 
     ENCFF541MXU_IMR-90  ENCFF541MXU IMR-90 by ChIP-seq    Data format 
     ENCFF645QJT_IMR-90  ENCFF645QJT IMR-90 by ChIP-seq    Data format 
     ENCFF678EKD_IMR-90  ENCFF678EKD IMR-90 by ChIP-seq    Data format 
     ENCFF884DJG_IMR-90  ENCFF884DJG IMR-90 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:IMR-90
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF