Assay Summary H4K12ac Summary Track Settings
 
Roadmap Epigenome H4K12ac Summary

Track collection: Assay Summary

+  Description
+  All tracks in this collection (37)

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     ENCFF025FOT_trophoblast_cell  ENCFF025FOT trophoblast_cell by ChIP-seq    Data format 
     ENCFF115DSH_trophoblast_cell  ENCFF115DSH trophoblast_cell by ChIP-seq    Data format 
     ENCFF310PYU_trophoblast_cell  ENCFF310PYU trophoblast_cell by ChIP-seq    Data format 
     ENCFF448AJZ_trophoblast_cell  ENCFF448AJZ trophoblast_cell by ChIP-seq    Data format 
     ENCFF493FUQ_trophoblast_cell  ENCFF493FUQ trophoblast_cell by ChIP-seq    Data format 
     ENCFF553KPV_trophoblast_cell  ENCFF553KPV trophoblast_cell by ChIP-seq    Data format 
     ENCFF583NJY_trophoblast_cell  ENCFF583NJY trophoblast_cell by ChIP-seq    Data format 
     ENCFF610MTE_trophoblast_cell  ENCFF610MTE trophoblast_cell by ChIP-seq    Data format 
     ENCFF686OEQ_trophoblast_cell  ENCFF686OEQ trophoblast_cell by ChIP-seq    Data format 
     ENCFF719BQI_trophoblast_cell  ENCFF719BQI trophoblast_cell by ChIP-seq    Data format 
     ENCFF989FOZ_trophoblast_cell  ENCFF989FOZ trophoblast_cell by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:IMR-90
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF