Assay Summary H4K5ac Summary Track Settings
 
Roadmap Epigenome H4K5ac Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF015FLH_H9  ENCFF015FLH H9 by ChIP-seq    Data format 
     ENCFF045GZR_H1  ENCFF045GZR H1 by ChIP-seq    Data format 
     ENCFF047DYU_H1  ENCFF047DYU H1 by ChIP-seq    Data format 
     ENCFF054CJL_IMR-90  ENCFF054CJL IMR-90 by ChIP-seq    Data format 
     ENCFF073QVS_H1  ENCFF073QVS H1 by ChIP-seq    Data format 
     ENCFF079XGW_IMR-90  ENCFF079XGW IMR-90 by ChIP-seq    Data format 
     ENCFF114DFQ_H1  ENCFF114DFQ H1 by ChIP-seq    Data format 
     ENCFF196PTW_H9  ENCFF196PTW H9 by ChIP-seq    Data format 
     ENCFF220WKL_H1  ENCFF220WKL H1 by ChIP-seq    Data format 
     ENCFF222UNX_H9  ENCFF222UNX H9 by ChIP-seq    Data format 
     ENCFF224SPM_IMR-90  ENCFF224SPM IMR-90 by ChIP-seq    Data format 
     ENCFF286QIW_H1  ENCFF286QIW H1 by ChIP-seq    Data format 
     ENCFF293KCV_mesendoderm  ENCFF293KCV mesendoderm by ChIP-seq    Data format 
     ENCFF381WWU_H1  ENCFF381WWU H1 by ChIP-seq    Data format 
     ENCFF382MFP_IMR-90  ENCFF382MFP IMR-90 by ChIP-seq    Data format 
     ENCFF397CXS_H9  ENCFF397CXS H9 by ChIP-seq    Data format 
     ENCFF512TZG_H9  ENCFF512TZG H9 by ChIP-seq    Data format 
     ENCFF520GRC_H9  ENCFF520GRC H9 by ChIP-seq    Data format 
     ENCFF524BQQ_IMR-90  ENCFF524BQQ IMR-90 by ChIP-seq    Data format 
     ENCFF570ZWG_H1  ENCFF570ZWG H1 by ChIP-seq    Data format 
     ENCFF574SUE_IMR-90  ENCFF574SUE IMR-90 by ChIP-seq    Data format 
     ENCFF604FUM_mesendoderm  ENCFF604FUM mesendoderm by ChIP-seq    Data format 
     ENCFF648KXC_H1  ENCFF648KXC H1 by ChIP-seq    Data format 
     ENCFF648UJX_H9  ENCFF648UJX H9 by ChIP-seq    Data format 
     ENCFF649ENW_H9  ENCFF649ENW H9 by ChIP-seq    Data format 
     ENCFF673BFA_H1  ENCFF673BFA H1 by ChIP-seq    Data format 
     ENCFF716DGP_H1  ENCFF716DGP H1 by ChIP-seq    Data format 
     ENCFF720LJR_IMR-90  ENCFF720LJR IMR-90 by ChIP-seq    Data format 
     ENCFF740JWV_mesendoderm  ENCFF740JWV mesendoderm by ChIP-seq    Data format 
     ENCFF746PKA_H9  ENCFF746PKA H9 by ChIP-seq    Data format 
     ENCFF806DQS_H9  ENCFF806DQS H9 by ChIP-seq    Data format 
     ENCFF817FLJ_IMR-90  ENCFF817FLJ IMR-90 by ChIP-seq    Data format 
     ENCFF824EPH_H9  ENCFF824EPH H9 by ChIP-seq    Data format 
     ENCFF858BSB_IMR-90  ENCFF858BSB IMR-90 by ChIP-seq    Data format 
     ENCFF898YIV_IMR-90  ENCFF898YIV IMR-90 by ChIP-seq    Data format 
     ENCFF909DQR_IMR-90  ENCFF909DQR IMR-90 by ChIP-seq    Data format 
     ENCFF915ONR_H9  ENCFF915ONR H9 by ChIP-seq    Data format 
     ENCFF940DMX_H1  ENCFF940DMX H1 by ChIP-seq    Data format 
     ENCFF993XRI_IMR-90  ENCFF993XRI IMR-90 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:IMR-90
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF