Assay Summary H4K8ac Summary Track Settings
 
Roadmap Epigenome H4K8ac Summary

Track collection: Assay Summary

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+  All tracks in this collection (37)

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     ENCFF021MTC_trophoblast_cell  ENCFF021MTC trophoblast_cell by ChIP-seq    Data format 
     ENCFF022AHH_mesenchymal_stem_cell  ENCFF022AHH mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF031AJB_trophoblast_cell  ENCFF031AJB trophoblast_cell by ChIP-seq    Data format 
     ENCFF034GOB_mesenchymal_stem_cell  ENCFF034GOB mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF050QRM_mesenchymal_stem_cell  ENCFF050QRM mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF084LAU_IMR-90  ENCFF084LAU IMR-90 by ChIP-seq    Data format 
     ENCFF086QSN_trophoblast_cell  ENCFF086QSN trophoblast_cell by ChIP-seq    Data format 
     ENCFF092ECA_trophoblast_cell  ENCFF092ECA trophoblast_cell by ChIP-seq    Data format 
     ENCFF123JIC_IMR-90  ENCFF123JIC IMR-90 by ChIP-seq    Data format 
     ENCFF125TIS_H1  ENCFF125TIS H1 by ChIP-seq    Data format 
     ENCFF144CAK_mesendoderm  ENCFF144CAK mesendoderm by ChIP-seq    Data format 
     ENCFF152BEO_trophoblast_cell  ENCFF152BEO trophoblast_cell by ChIP-seq    Data format 
     ENCFF197IEP_IMR-90  ENCFF197IEP IMR-90 by ChIP-seq    Data format 
     ENCFF208ULV_trophoblast_cell  ENCFF208ULV trophoblast_cell by ChIP-seq    Data format 
     ENCFF219KUK_trophoblast_cell  ENCFF219KUK trophoblast_cell by ChIP-seq    Data format 
     ENCFF238AXU_trophoblast_cell  ENCFF238AXU trophoblast_cell by ChIP-seq    Data format 
     ENCFF239QZV_IMR-90  ENCFF239QZV IMR-90 by ChIP-seq    Data format 
     ENCFF242GOE_IMR-90  ENCFF242GOE IMR-90 by ChIP-seq    Data format 
     ENCFF248FXS_IMR-90  ENCFF248FXS IMR-90 by ChIP-seq    Data format 
     ENCFF268JBS_trophoblast_cell  ENCFF268JBS trophoblast_cell by ChIP-seq    Data format 
     ENCFF291HTK_neuronal_stem_cell  ENCFF291HTK neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF300OZI_neuronal_stem_cell  ENCFF300OZI neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF325IMA_IMR-90  ENCFF325IMA IMR-90 by ChIP-seq    Data format 
     ENCFF326PUW_mesenchymal_stem_cell  ENCFF326PUW mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF328FUE_IMR-90  ENCFF328FUE IMR-90 by ChIP-seq    Data format 
     ENCFF333ORR_H9  ENCFF333ORR H9 by ChIP-seq    Data format 
     ENCFF383EUU_IMR-90  ENCFF383EUU IMR-90 by ChIP-seq    Data format 
     ENCFF397ZKS_IMR-90  ENCFF397ZKS IMR-90 by ChIP-seq    Data format 
     ENCFF406TJH_mesendoderm  ENCFF406TJH mesendoderm by ChIP-seq    Data format 
     ENCFF406YCI_IMR-90  ENCFF406YCI IMR-90 by ChIP-seq    Data format 
     ENCFF454PLY_IMR-90  ENCFF454PLY IMR-90 by ChIP-seq    Data format 
     ENCFF477BEL_IMR-90  ENCFF477BEL IMR-90 by ChIP-seq    Data format 
     ENCFF497KWX_H9  ENCFF497KWX H9 by ChIP-seq    Data format 
     ENCFF503FNN_mesendoderm  ENCFF503FNN mesendoderm by ChIP-seq    Data format 
     ENCFF504TGP_H9  ENCFF504TGP H9 by ChIP-seq    Data format 
     ENCFF510WQU_H1  ENCFF510WQU H1 by ChIP-seq    Data format 
     ENCFF523ZTP_mesenchymal_stem_cell  ENCFF523ZTP mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF536MBM_IMR-90  ENCFF536MBM IMR-90 by ChIP-seq    Data format 
     ENCFF540VIA_neuronal_stem_cell  ENCFF540VIA neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF561AMK_IMR-90  ENCFF561AMK IMR-90 by ChIP-seq    Data format 
     ENCFF562RUL_IMR-90  ENCFF562RUL IMR-90 by ChIP-seq    Data format 
     ENCFF562TJP_IMR-90  ENCFF562TJP IMR-90 by ChIP-seq    Data format 
     ENCFF566QDP_H9  ENCFF566QDP H9 by ChIP-seq    Data format 
     ENCFF576GKR_H9  ENCFF576GKR H9 by ChIP-seq    Data format 
     ENCFF584JKF_IMR-90  ENCFF584JKF IMR-90 by ChIP-seq    Data format 
     ENCFF614CMT_IMR-90  ENCFF614CMT IMR-90 by ChIP-seq    Data format 
     ENCFF626YQC_H9  ENCFF626YQC H9 by ChIP-seq    Data format 
     ENCFF654UHF_trophoblast_cell  ENCFF654UHF trophoblast_cell by ChIP-seq    Data format 
     ENCFF667QIU_H9  ENCFF667QIU H9 by ChIP-seq    Data format 
     ENCFF668WSX_H1  ENCFF668WSX H1 by ChIP-seq    Data format 
     ENCFF672GEM_IMR-90  ENCFF672GEM IMR-90 by ChIP-seq    Data format 
     ENCFF680AQN_H9  ENCFF680AQN H9 by ChIP-seq    Data format 
     ENCFF708XSW_trophoblast_cell  ENCFF708XSW trophoblast_cell by ChIP-seq    Data format 
     ENCFF721GPS_IMR-90  ENCFF721GPS IMR-90 by ChIP-seq    Data format 
     ENCFF740LIZ_mesenchymal_stem_cell  ENCFF740LIZ mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF768JOP_mesendoderm  ENCFF768JOP mesendoderm by ChIP-seq    Data format 
     ENCFF776JHS_H1  ENCFF776JHS H1 by ChIP-seq    Data format 
     ENCFF782VON_H9  ENCFF782VON H9 by ChIP-seq    Data format 
     ENCFF796EXK_H9  ENCFF796EXK H9 by ChIP-seq    Data format 
     ENCFF813MOH_mesenchymal_stem_cell  ENCFF813MOH mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF817REV_IMR-90  ENCFF817REV IMR-90 by ChIP-seq    Data format 
     ENCFF881TXY_IMR-90  ENCFF881TXY IMR-90 by ChIP-seq    Data format 
     ENCFF914HKH_H9  ENCFF914HKH H9 by ChIP-seq    Data format 
     ENCFF917CGE_mesenchymal_stem_cell  ENCFF917CGE mesenchymal_stem_cell by ChIP-seq    Data format 
     ENCFF938PJQ_H1  ENCFF938PJQ H1 by ChIP-seq    Data format 
     ENCFF954SGW_IMR-90  ENCFF954SGW IMR-90 by ChIP-seq    Data format 
     ENCFF958PNE_H1  ENCFF958PNE H1 by ChIP-seq    Data format 
     ENCFF970VFX_neuronal_stem_cell  ENCFF970VFX neuronal_stem_cell by ChIP-seq    Data format 
     ENCFF979BTG_H9  ENCFF979BTG H9 by ChIP-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the assay type. Data were generated using various assay methods across many different sample types for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF