Sample Summary CD14-positive_monocyte Summary Track Settings
 
Roadmap Epigenome CD14-positive_monocyte Summary

Track collection: Sample Summary

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     ENCFF034DRC_WGBS  ENCFF034DRC WGBS    Data format 
     ENCFF046RHE_WGBS  ENCFF046RHE WGBS    Data format 
     ENCFF090IWJ_H3K36me3  ENCFF090IWJ H3K36me3    Data format 
     ENCFF111JDF_polyA_plus_RNA-seq  ENCFF111JDF polyA_plus_RNA-seq    Data format 
     ENCFF116NCG_H3K27ac  ENCFF116NCG H3K27ac    Data format 
     ENCFF123VGW_DNase-seq  ENCFF123VGW DNase-seq    Data format 
     ENCFF132TOW_H3K36me3  ENCFF132TOW H3K36me3    Data format 
     ENCFF135CCA_H3K4me1  ENCFF135CCA H3K4me1    Data format 
     ENCFF167CTD_H3K9me3  ENCFF167CTD H3K9me3    Data format 
     ENCFF237EQI_H3K4me1  ENCFF237EQI H3K4me1    Data format 
     ENCFF296KZJ_H3K4me3  ENCFF296KZJ H3K4me3    Data format 
     ENCFF353UAY_DNase-seq  ENCFF353UAY DNase-seq    Data format 
     ENCFF363RHA_H3K4me3  ENCFF363RHA H3K4me3    Data format 
     ENCFF377AUR_H3K9me3  ENCFF377AUR H3K9me3    Data format 
     ENCFF394PKR_H3K27me3  ENCFF394PKR H3K27me3    Data format 
     ENCFF446EKY_H3K4me1  ENCFF446EKY H3K4me1    Data format 
     ENCFF459WKU_DNase-seq  ENCFF459WKU DNase-seq    Data format 
     ENCFF484ACP_H3K27me3  ENCFF484ACP H3K27me3    Data format 
     ENCFF537WKB_polyA_plus_RNA-seq  ENCFF537WKB polyA_plus_RNA-seq    Data format 
     ENCFF568YMC_H3K36me3  ENCFF568YMC H3K36me3    Data format 
     ENCFF577YZK_H3K4me1  ENCFF577YZK H3K4me1    Data format 
     ENCFF601NLG_H3K27ac  ENCFF601NLG H3K27ac    Data format 
     ENCFF626UTP_H3K27ac  ENCFF626UTP H3K27ac    Data format 
     ENCFF668GWR_WGBS  ENCFF668GWR WGBS    Data format 
     ENCFF688ARC_H3K9me3  ENCFF688ARC H3K9me3    Data format 
     ENCFF722MXM_DNase-seq  ENCFF722MXM DNase-seq    Data format 
     ENCFF724HAH_DNase-seq  ENCFF724HAH DNase-seq    Data format 
     ENCFF739LQS_H3K4me3  ENCFF739LQS H3K4me3    Data format 
     ENCFF754MVG_H3K27ac  ENCFF754MVG H3K27ac    Data format 
     ENCFF759CKK_DNase-seq  ENCFF759CKK DNase-seq    Data format 
     ENCFF760XHP_H3K4me3  ENCFF760XHP H3K4me3    Data format 
     ENCFF777AOE_H3K36me3  ENCFF777AOE H3K36me3    Data format 
     ENCFF777EGG_H3K27me3  ENCFF777EGG H3K27me3    Data format 
     ENCFF784ZEO_H3K9me3  ENCFF784ZEO H3K9me3    Data format 
     ENCFF852SLU_H3K27me3  ENCFF852SLU H3K27me3    Data format 
     ENCFF926QTW_polyA_plus_RNA-seq  ENCFF926QTW polyA_plus_RNA-seq    Data format 
     ENCFF947YPP_polyA_plus_RNA-seq  ENCFF947YPP polyA_plus_RNA-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:caudate_nucleus
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF