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Roadmap Epigenome ES-I3 Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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Graph configuration help
All subtracks:
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     ENCFF015GAR_H3K36me3  ENCFF015GAR H3K36me3    Data format 
     ENCFF027RHW_H3K4me1  ENCFF027RHW H3K4me1    Data format 
     ENCFF052YGV_H3K36me3  ENCFF052YGV H3K36me3    Data format 
     ENCFF085DEW_H3K9ac  ENCFF085DEW H3K9ac    Data format 
     ENCFF091UIX_H3K4me1  ENCFF091UIX H3K4me1    Data format 
     ENCFF146CHV_H3K36me3  ENCFF146CHV H3K36me3    Data format 
     ENCFF150RBE_H3K36me3  ENCFF150RBE H3K36me3    Data format 
     ENCFF163UUD_H3K4me1  ENCFF163UUD H3K4me1    Data format 
     ENCFF198AQQ_H3K36me3  ENCFF198AQQ H3K36me3    Data format 
     ENCFF224OLU_H3K9ac  ENCFF224OLU H3K9ac    Data format 
     ENCFF226HIO_H3K4me1  ENCFF226HIO H3K4me1    Data format 
     ENCFF236DTR_H3K9me3  ENCFF236DTR H3K9me3    Data format 
     ENCFF297ZWT_H3K9ac  ENCFF297ZWT H3K9ac    Data format 
     ENCFF314LRI_H3K9ac  ENCFF314LRI H3K9ac    Data format 
     ENCFF360ZOO_H3K36me3  ENCFF360ZOO H3K36me3    Data format 
     ENCFF369TIS_H3K4me1  ENCFF369TIS H3K4me1    Data format 
     ENCFF399KPK_H3K9me3  ENCFF399KPK H3K9me3    Data format 
     ENCFF404LEL_H3K36me3  ENCFF404LEL H3K36me3    Data format 
     ENCFF417IHM_H3K9me3  ENCFF417IHM H3K9me3    Data format 
     ENCFF445HJN_H3K9me3  ENCFF445HJN H3K9me3    Data format 
     ENCFF530CVB_H3K9me3  ENCFF530CVB H3K9me3    Data format 
     ENCFF540UFJ_H3K4me1  ENCFF540UFJ H3K4me1    Data format 
     ENCFF560FKR_H3K9ac  ENCFF560FKR H3K9ac    Data format 
     ENCFF579RDN_H3K4me1  ENCFF579RDN H3K4me1    Data format 
     ENCFF601GUQ_H3K9me3  ENCFF601GUQ H3K9me3    Data format 
     ENCFF607UAG_H3K4me1  ENCFF607UAG H3K4me1    Data format 
     ENCFF635PWK_H3K9me3  ENCFF635PWK H3K9me3    Data format 
     ENCFF637EWA_H3K9ac  ENCFF637EWA H3K9ac    Data format 
     ENCFF681XAO_H3K9me3  ENCFF681XAO H3K9me3    Data format 
     ENCFF693DIL_H3K9ac  ENCFF693DIL H3K9ac    Data format 
     ENCFF707SXR_H3K9ac  ENCFF707SXR H3K9ac    Data format 
     ENCFF720YHG_H3K9ac  ENCFF720YHG H3K9ac    Data format 
     ENCFF750GOF_H3K36me3  ENCFF750GOF H3K36me3    Data format 
     ENCFF761AWE_H3K36me3  ENCFF761AWE H3K36me3    Data format 
     ENCFF768WDS_H3K36me3  ENCFF768WDS H3K36me3    Data format 
     ENCFF789SVZ_H3K9ac  ENCFF789SVZ H3K9ac    Data format 
     ENCFF793WLX_H3K9ac  ENCFF793WLX H3K9ac    Data format 
     ENCFF803BCV_H3K36me3  ENCFF803BCV H3K36me3    Data format 
     ENCFF805MZK_H3K9me3  ENCFF805MZK H3K9me3    Data format 
     ENCFF825MEW_H3K4me1  ENCFF825MEW H3K4me1    Data format 
     ENCFF830BOP_H3K4me1  ENCFF830BOP H3K4me1    Data format 
     ENCFF878LNW_H3K36me3  ENCFF878LNW H3K36me3    Data format 
     ENCFF885TYF_H3K9ac  ENCFF885TYF H3K9ac    Data format 
     ENCFF909UGF_H3K9me3  ENCFF909UGF H3K9me3    Data format 
     ENCFF913XFS_H3K9me3  ENCFF913XFS H3K9me3    Data format 
     ENCFF916LAT_H3K4me1  ENCFF916LAT H3K4me1    Data format 
     ENCFF941PIR_H3K9me3  ENCFF941PIR H3K9me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:plus_strand_methylation_state_at_CpG
Sample:endodermal_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF