Sample Summary H7 Summary Track Settings
 
Roadmap Epigenome H7 Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

Display mode:       Reset to defaults

Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF063DFY_H3K27me3  ENCFF063DFY H3K27me3    Data format 
     ENCFF164BAA_H3K9ac  ENCFF164BAA H3K9ac    Data format 
     ENCFF173UFW_H3K9ac  ENCFF173UFW H3K9ac    Data format 
     ENCFF211GVF_H3K27me3  ENCFF211GVF H3K27me3    Data format 
     ENCFF238UJF_H3K36me3  ENCFF238UJF H3K36me3    Data format 
     ENCFF373JUZ_H3K4me1  ENCFF373JUZ H3K4me1    Data format 
     ENCFF497MMW_H3K36me3  ENCFF497MMW H3K36me3    Data format 
     ENCFF535BLT_H3K4me1  ENCFF535BLT H3K4me1    Data format 
     ENCFF561WJL_H3K36me3  ENCFF561WJL H3K36me3    Data format 
     ENCFF621YFB_H3K9me3  ENCFF621YFB H3K9me3    Data format 
     ENCFF711DZE_H3K36me3  ENCFF711DZE H3K36me3    Data format 
     ENCFF723MZN_H3K9ac  ENCFF723MZN H3K9ac    Data format 
     ENCFF728MAA_H3K9ac  ENCFF728MAA H3K9ac    Data format 
     ENCFF742GMF_H3K27me3  ENCFF742GMF H3K27me3    Data format 
     ENCFF768UJE_H3K9me3  ENCFF768UJE H3K9me3    Data format 
     ENCFF852BNY_H3K4me1  ENCFF852BNY H3K4me1    Data format 
     ENCFF872VUV_H3K4me1  ENCFF872VUV H3K4me1    Data format 
     ENCFF898DIG_H3K9me3  ENCFF898DIG H3K9me3    Data format 
     ENCFF910YUU_H3K27me3  ENCFF910YUU H3K27me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:H1
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF