Sample Summary HUES48 Summary Track Settings
 
Roadmap Epigenome HUES48 Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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     ENCFF009PDQ_H3K27me3  ENCFF009PDQ H3K27me3    Data format 
     ENCFF041TOQ_H3K9ac  ENCFF041TOQ H3K9ac    Data format 
     ENCFF052KDI_H3K4me3  ENCFF052KDI H3K4me3    Data format 
     ENCFF055GTG_H3K36me3  ENCFF055GTG H3K36me3    Data format 
     ENCFF064WDZ_H3K9me3  ENCFF064WDZ H3K9me3    Data format 
     ENCFF066HEK_H3K4me3  ENCFF066HEK H3K4me3    Data format 
     ENCFF074KQX_H3K4me1  ENCFF074KQX H3K4me1    Data format 
     ENCFF089CLI_H3K27me3  ENCFF089CLI H3K27me3    Data format 
     ENCFF090EQB_H3K4me3  ENCFF090EQB H3K4me3    Data format 
     ENCFF114UCM_H3K9ac  ENCFF114UCM H3K9ac    Data format 
     ENCFF130MZO_H3K36me3  ENCFF130MZO H3K36me3    Data format 
     ENCFF138NGC_H3K9ac  ENCFF138NGC H3K9ac    Data format 
     ENCFF154VRZ_H3K36me3  ENCFF154VRZ H3K36me3    Data format 
     ENCFF169DBC_H3K4me1  ENCFF169DBC H3K4me1    Data format 
     ENCFF178FWZ_H3K9ac  ENCFF178FWZ H3K9ac    Data format 
     ENCFF215ASJ_H3K27ac  ENCFF215ASJ H3K27ac    Data format 
     ENCFF291EXC_H3K27me3  ENCFF291EXC H3K27me3    Data format 
     ENCFF293NMP_H3K36me3  ENCFF293NMP H3K36me3    Data format 
     ENCFF293XNX_H3K9ac  ENCFF293XNX H3K9ac    Data format 
     ENCFF321VVK_H3K27me3  ENCFF321VVK H3K27me3    Data format 
     ENCFF332HAA_H3K27ac  ENCFF332HAA H3K27ac    Data format 
     ENCFF345HPM_H3K27me3  ENCFF345HPM H3K27me3    Data format 
     ENCFF361IPW_H3K36me3  ENCFF361IPW H3K36me3    Data format 
     ENCFF375NMO_H3K4me3  ENCFF375NMO H3K4me3    Data format 
     ENCFF387UMA_H3K9me3  ENCFF387UMA H3K9me3    Data format 
     ENCFF389TCT_H3K27me3  ENCFF389TCT H3K27me3    Data format 
     ENCFF409GHV_H3K36me3  ENCFF409GHV H3K36me3    Data format 
     ENCFF451NOH_H3K4me3  ENCFF451NOH H3K4me3    Data format 
     ENCFF467PFT_H3K4me1  ENCFF467PFT H3K4me1    Data format 
     ENCFF471PQO_H3K9ac  ENCFF471PQO H3K9ac    Data format 
     ENCFF473XRI_H3K9me3  ENCFF473XRI H3K9me3    Data format 
     ENCFF481TCV_H3K36me3  ENCFF481TCV H3K36me3    Data format 
     ENCFF498TAB_H3K27me3  ENCFF498TAB H3K27me3    Data format 
     ENCFF504RKC_H3K27me3  ENCFF504RKC H3K27me3    Data format 
     ENCFF510UCS_H3K9me3  ENCFF510UCS H3K9me3    Data format 
     ENCFF516TOS_H3K9ac  ENCFF516TOS H3K9ac    Data format 
     ENCFF516WSK_H3K9me3  ENCFF516WSK H3K9me3    Data format 
     ENCFF535SYM_H3K9ac  ENCFF535SYM H3K9ac    Data format 
     ENCFF557FCH_H3K4me3  ENCFF557FCH H3K4me3    Data format 
     ENCFF558LNL_H3K9me3  ENCFF558LNL H3K9me3    Data format 
     ENCFF560KWO_H3K36me3  ENCFF560KWO H3K36me3    Data format 
     ENCFF563LTE_H3K9ac  ENCFF563LTE H3K9ac    Data format 
     ENCFF570ENQ_H3K27me3  ENCFF570ENQ H3K27me3    Data format 
     ENCFF583VBS_H3K9me3  ENCFF583VBS H3K9me3    Data format 
     ENCFF589TTW_H3K36me3  ENCFF589TTW H3K36me3    Data format 
     ENCFF620PTY_H3K4me3  ENCFF620PTY H3K4me3    Data format 
     ENCFF634AFO_H3K9ac  ENCFF634AFO H3K9ac    Data format 
     ENCFF657IBD_H3K9me3  ENCFF657IBD H3K9me3    Data format 
     ENCFF678ACA_H3K4me1  ENCFF678ACA H3K4me1    Data format 
     ENCFF679UVB_H3K9me3  ENCFF679UVB H3K9me3    Data format 
     ENCFF681KNT_H3K36me3  ENCFF681KNT H3K36me3    Data format 
     ENCFF686WRD_H3K9ac  ENCFF686WRD H3K9ac    Data format 
     ENCFF688WDC_H3K9me3  ENCFF688WDC H3K9me3    Data format 
     ENCFF694IAY_H3K4me1  ENCFF694IAY H3K4me1    Data format 
     ENCFF705TIA_H3K9me3  ENCFF705TIA H3K9me3    Data format 
     ENCFF715GTS_H3K27me3  ENCFF715GTS H3K27me3    Data format 
     ENCFF733IQI_H3K4me1  ENCFF733IQI H3K4me1    Data format 
     ENCFF740CFN_H3K27me3  ENCFF740CFN H3K27me3    Data format 
     ENCFF741UPI_H3K27me3  ENCFF741UPI H3K27me3    Data format 
     ENCFF768RIN_H3K4me3  ENCFF768RIN H3K4me3    Data format 
     ENCFF837AVN_H3K4me3  ENCFF837AVN H3K4me3    Data format 
     ENCFF837DVY_H3K27ac  ENCFF837DVY H3K27ac    Data format 
     ENCFF857UNG_H3K4me3  ENCFF857UNG H3K4me3    Data format 
     ENCFF862PUG_H3K4me1  ENCFF862PUG H3K4me1    Data format 
     ENCFF870FRI_H3K4me3  ENCFF870FRI H3K4me3    Data format 
     ENCFF885ILH_H3K36me3  ENCFF885ILH H3K36me3    Data format 
     ENCFF914CRZ_H3K4me1  ENCFF914CRZ H3K4me1    Data format 
     ENCFF916ARE_H3K4me1  ENCFF916ARE H3K4me1    Data format 
     ENCFF917KCI_H3K4me1  ENCFF917KCI H3K4me1    Data format 
     ENCFF923EZY_H3K27ac  ENCFF923EZY H3K27ac    Data format 
     ENCFF944IZD_H3K4me3  ENCFF944IZD H3K4me3    Data format 
     ENCFF954MCP_H3K9ac  ENCFF954MCP H3K9ac    Data format 
     ENCFF959ISW_H3K4me1  ENCFF959ISW H3K4me1    Data format 
     ENCFF975LWQ_H3K36me3  ENCFF975LWQ H3K36me3    Data format 
     ENCFF975OGU_H3K9me3  ENCFF975OGU H3K9me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:heart_right_ventricle
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF