Sample Summary HUES6 Summary Track Settings
 
Roadmap Epigenome HUES6 Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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Draw y indicator lines:at y = 0.0:    at y =
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All subtracks:
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     ENCFF015LQZ_H3K27ac  ENCFF015LQZ H3K27ac    Data format 
     ENCFF019AFJ_H3K36me3  ENCFF019AFJ H3K36me3    Data format 
     ENCFF064FJR_H3K9ac  ENCFF064FJR H3K9ac    Data format 
     ENCFF069FLU_H3K27me3  ENCFF069FLU H3K27me3    Data format 
     ENCFF073VXE_H3K4me1  ENCFF073VXE H3K4me1    Data format 
     ENCFF078PYI_H3K27me3  ENCFF078PYI H3K27me3    Data format 
     ENCFF105PIB_H3K4me3  ENCFF105PIB H3K4me3    Data format 
     ENCFF112WFO_H3K27ac  ENCFF112WFO H3K27ac    Data format 
     ENCFF141GOD_H3K4me1  ENCFF141GOD H3K4me1    Data format 
     ENCFF152FTL_H3K9me3  ENCFF152FTL H3K9me3    Data format 
     ENCFF177HSD_H3K9ac  ENCFF177HSD H3K9ac    Data format 
     ENCFF181IKM_H3K27me3  ENCFF181IKM H3K27me3    Data format 
     ENCFF211NCD_H3K27ac  ENCFF211NCD H3K27ac    Data format 
     ENCFF227JEQ_H3K4me3  ENCFF227JEQ H3K4me3    Data format 
     ENCFF254GQU_H3K4me3  ENCFF254GQU H3K4me3    Data format 
     ENCFF263WUG_H3K36me3  ENCFF263WUG H3K36me3    Data format 
     ENCFF270JTA_H3K4me3  ENCFF270JTA H3K4me3    Data format 
     ENCFF288SKL_H3K9me3  ENCFF288SKL H3K9me3    Data format 
     ENCFF317ULM_H3K9me3  ENCFF317ULM H3K9me3    Data format 
     ENCFF340BGV_H3K4me3  ENCFF340BGV H3K4me3    Data format 
     ENCFF348TLW_H3K9me3  ENCFF348TLW H3K9me3    Data format 
     ENCFF356RWL_H3K4me1  ENCFF356RWL H3K4me1    Data format 
     ENCFF357UBV_H3K9me3  ENCFF357UBV H3K9me3    Data format 
     ENCFF363UGD_H3K9me3  ENCFF363UGD H3K9me3    Data format 
     ENCFF376WXJ_H3K9me3  ENCFF376WXJ H3K9me3    Data format 
     ENCFF390QET_H3K27ac  ENCFF390QET H3K27ac    Data format 
     ENCFF392JWG_H3K27ac  ENCFF392JWG H3K27ac    Data format 
     ENCFF400ZVT_H3K36me3  ENCFF400ZVT H3K36me3    Data format 
     ENCFF406IQK_H3K4me1  ENCFF406IQK H3K4me1    Data format 
     ENCFF411SAF_H3K9ac  ENCFF411SAF H3K9ac    Data format 
     ENCFF450LWG_H3K27ac  ENCFF450LWG H3K27ac    Data format 
     ENCFF467CRN_H3K4me3  ENCFF467CRN H3K4me3    Data format 
     ENCFF477AIW_H3K36me3  ENCFF477AIW H3K36me3    Data format 
     ENCFF482AHZ_H3K27me3  ENCFF482AHZ H3K27me3    Data format 
     ENCFF489EZJ_H3K4me1  ENCFF489EZJ H3K4me1    Data format 
     ENCFF489IIK_H3K36me3  ENCFF489IIK H3K36me3    Data format 
     ENCFF515STY_H3K27me3  ENCFF515STY H3K27me3    Data format 
     ENCFF519LEW_H3K4me3  ENCFF519LEW H3K4me3    Data format 
     ENCFF525CLE_H3K4me1  ENCFF525CLE H3K4me1    Data format 
     ENCFF529TWB_H3K4me1  ENCFF529TWB H3K4me1    Data format 
     ENCFF535BDO_H3K4me3  ENCFF535BDO H3K4me3    Data format 
     ENCFF539ZDP_H3K27me3  ENCFF539ZDP H3K27me3    Data format 
     ENCFF541FLD_H3K9ac  ENCFF541FLD H3K9ac    Data format 
     ENCFF549WZF_H3K9me3  ENCFF549WZF H3K9me3    Data format 
     ENCFF553KUK_H3K27ac  ENCFF553KUK H3K27ac    Data format 
     ENCFF563BLS_H3K4me1  ENCFF563BLS H3K4me1    Data format 
     ENCFF563IYZ_H3K36me3  ENCFF563IYZ H3K36me3    Data format 
     ENCFF571PHO_H3K27me3  ENCFF571PHO H3K27me3    Data format 
     ENCFF581XDV_H3K4me1  ENCFF581XDV H3K4me1    Data format 
     ENCFF583PJA_H3K36me3  ENCFF583PJA H3K36me3    Data format 
     ENCFF595BUX_H3K36me3  ENCFF595BUX H3K36me3    Data format 
     ENCFF613XBG_H3K27me3  ENCFF613XBG H3K27me3    Data format 
     ENCFF625XUV_H3K27me3  ENCFF625XUV H3K27me3    Data format 
     ENCFF627LKX_H3K4me3  ENCFF627LKX H3K4me3    Data format 
     ENCFF681BTT_H3K9me3  ENCFF681BTT H3K9me3    Data format 
     ENCFF694ESS_H3K36me3  ENCFF694ESS H3K36me3    Data format 
     ENCFF699PNP_H3K9me3  ENCFF699PNP H3K9me3    Data format 
     ENCFF705BGD_H3K36me3  ENCFF705BGD H3K36me3    Data format 
     ENCFF712RUN_H3K36me3  ENCFF712RUN H3K36me3    Data format 
     ENCFF725EMZ_H3K27me3  ENCFF725EMZ H3K27me3    Data format 
     ENCFF728WYG_H3K9me3  ENCFF728WYG H3K9me3    Data format 
     ENCFF730YFD_H3K27ac  ENCFF730YFD H3K27ac    Data format 
     ENCFF732HRT_H3K4me3  ENCFF732HRT H3K4me3    Data format 
     ENCFF736BTX_H3K27me3  ENCFF736BTX H3K27me3    Data format 
     ENCFF769DEL_H3K36me3  ENCFF769DEL H3K36me3    Data format 
     ENCFF815UNF_H3K4me3  ENCFF815UNF H3K4me3    Data format 
     ENCFF818DLY_H3K27ac  ENCFF818DLY H3K27ac    Data format 
     ENCFF834AKW_H3K27ac  ENCFF834AKW H3K27ac    Data format 
     ENCFF860ZRE_H3K4me1  ENCFF860ZRE H3K4me1    Data format 
     ENCFF895YAD_H3K27me3  ENCFF895YAD H3K27me3    Data format 
     ENCFF905JES_H3K27ac  ENCFF905JES H3K27ac    Data format 
     ENCFF920ZLD_H3K4me1  ENCFF920ZLD H3K4me1    Data format 
     ENCFF921HUJ_H3K27ac  ENCFF921HUJ H3K27ac    Data format 
     ENCFF928UGV_H3K4me1  ENCFF928UGV H3K4me1    Data format 
     ENCFF931CHD_H3K4me3  ENCFF931CHD H3K4me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:HUES48
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF