Sample Summary HUES64 Summary Track Settings
 
Roadmap Epigenome HUES64 Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF021OWW_H3K27me3  ENCFF021OWW H3K27me3    Data format 
     ENCFF022QBF_polyA_plus_RNA-seq  ENCFF022QBF polyA_plus_RNA-seq    Data format 
     ENCFF038IHE_H3K9me3  ENCFF038IHE H3K9me3    Data format 
     ENCFF056GDL_H3K4me1  ENCFF056GDL H3K4me1    Data format 
     ENCFF057DRT_H3K27ac  ENCFF057DRT H3K27ac    Data format 
     ENCFF063ZQD_H3K4me3  ENCFF063ZQD H3K4me3    Data format 
     ENCFF083EKS_H3K9ac  ENCFF083EKS H3K9ac    Data format 
     ENCFF089RZG_H3K36me3  ENCFF089RZG H3K36me3    Data format 
     ENCFF098GOY_H3K27me3  ENCFF098GOY H3K27me3    Data format 
     ENCFF113AAW_H3K27me3  ENCFF113AAW H3K27me3    Data format 
     ENCFF118LVC_H3K9me3  ENCFF118LVC H3K9me3    Data format 
     ENCFF126RIX_H3K27ac  ENCFF126RIX H3K27ac    Data format 
     ENCFF133JGT_H3K27me3  ENCFF133JGT H3K27me3    Data format 
     ENCFF140GSS_H3K27ac  ENCFF140GSS H3K27ac    Data format 
     ENCFF158ZXN_H3K27me3  ENCFF158ZXN H3K27me3    Data format 
     ENCFF162QXX_H3K36me3  ENCFF162QXX H3K36me3    Data format 
     ENCFF162YIX_H3K27ac  ENCFF162YIX H3K27ac    Data format 
     ENCFF170UJC_H3K4me1  ENCFF170UJC H3K4me1    Data format 
     ENCFF171CWT_H3K9ac  ENCFF171CWT H3K9ac    Data format 
     ENCFF181JZF_H3K4me3  ENCFF181JZF H3K4me3    Data format 
     ENCFF188BQL_H3K9ac  ENCFF188BQL H3K9ac    Data format 
     ENCFF202TKU_H3K9ac  ENCFF202TKU H3K9ac    Data format 
     ENCFF223CPQ_H3K4me3  ENCFF223CPQ H3K4me3    Data format 
     ENCFF223DKM_H3K9me3  ENCFF223DKM H3K9me3    Data format 
     ENCFF227QVD_H3K36me3  ENCFF227QVD H3K36me3    Data format 
     ENCFF234JFZ_H3K9me3  ENCFF234JFZ H3K9me3    Data format 
     ENCFF241UNV_H3K9ac  ENCFF241UNV H3K9ac    Data format 
     ENCFF247WCG_H3K9me3  ENCFF247WCG H3K9me3    Data format 
     ENCFF261CYG_WGBS  ENCFF261CYG WGBS    Data format 
     ENCFF264VGR_H3K4me3  ENCFF264VGR H3K4me3    Data format 
     ENCFF303WFV_H3K36me3  ENCFF303WFV H3K36me3    Data format 
     ENCFF311AGA_H3K27ac  ENCFF311AGA H3K27ac    Data format 
     ENCFF314SJI_polyA_plus_RNA-seq  ENCFF314SJI polyA_plus_RNA-seq    Data format 
     ENCFF321BNC_H3K9me3  ENCFF321BNC H3K9me3    Data format 
     ENCFF328UPD_H3K27ac  ENCFF328UPD H3K27ac    Data format 
     ENCFF346PAE_H3K27ac  ENCFF346PAE H3K27ac    Data format 
     ENCFF353KZF_H3K4me3  ENCFF353KZF H3K4me3    Data format 
     ENCFF381GKG_polyA_plus_RNA-seq  ENCFF381GKG polyA_plus_RNA-seq    Data format 
     ENCFF383CVA_H3K4me1  ENCFF383CVA H3K4me1    Data format 
     ENCFF390HRN_H3K36me3  ENCFF390HRN H3K36me3    Data format 
     ENCFF416RUW_H3K36me3  ENCFF416RUW H3K36me3    Data format 
     ENCFF441TOI_H3K27me3  ENCFF441TOI H3K27me3    Data format 
     ENCFF442MXL_H3K4me1  ENCFF442MXL H3K4me1    Data format 
     ENCFF453STR_polyA_plus_RNA-seq  ENCFF453STR polyA_plus_RNA-seq    Data format 
     ENCFF461TKK_H3K36me3  ENCFF461TKK H3K36me3    Data format 
     ENCFF469VBS_polyA_plus_RNA-seq  ENCFF469VBS polyA_plus_RNA-seq    Data format 
     ENCFF497ZHH_H3K27ac  ENCFF497ZHH H3K27ac    Data format 
     ENCFF532NGE_polyA_plus_RNA-seq  ENCFF532NGE polyA_plus_RNA-seq    Data format 
     ENCFF544MZN_H3K4me3  ENCFF544MZN H3K4me3    Data format 
     ENCFF561QFY_polyA_plus_RNA-seq  ENCFF561QFY polyA_plus_RNA-seq    Data format 
     ENCFF561ZZD_H3K36me3  ENCFF561ZZD H3K36me3    Data format 
     ENCFF571NZO_H3K9me3  ENCFF571NZO H3K9me3    Data format 
     ENCFF592GCL_H3K4me1  ENCFF592GCL H3K4me1    Data format 
     ENCFF593PSQ_H3K27me3  ENCFF593PSQ H3K27me3    Data format 
     ENCFF629OFA_H3K4me1  ENCFF629OFA H3K4me1    Data format 
     ENCFF629UEX_H3K4me3  ENCFF629UEX H3K4me3    Data format 
     ENCFF630TLV_H3K9ac  ENCFF630TLV H3K9ac    Data format 
     ENCFF655IBA_H3K27ac  ENCFF655IBA H3K27ac    Data format 
     ENCFF669AVI_H3K9ac  ENCFF669AVI H3K9ac    Data format 
     ENCFF672FMX_H3K4me3  ENCFF672FMX H3K4me3    Data format 
     ENCFF690BZV_H3K27ac  ENCFF690BZV H3K27ac    Data format 
     ENCFF698JRM_H3K9me3  ENCFF698JRM H3K9me3    Data format 
     ENCFF699HFD_H3K9ac  ENCFF699HFD H3K9ac    Data format 
     ENCFF700MMK_H3K9me3  ENCFF700MMK H3K9me3    Data format 
     ENCFF701BXH_H3K27me3  ENCFF701BXH H3K27me3    Data format 
     ENCFF703RQV_H3K9ac  ENCFF703RQV H3K9ac    Data format 
     ENCFF704ZHR_H3K4me3  ENCFF704ZHR H3K4me3    Data format 
     ENCFF711BCN_H3K4me3  ENCFF711BCN H3K4me3    Data format 
     ENCFF713IQA_H3K27me3  ENCFF713IQA H3K27me3    Data format 
     ENCFF716ZGW_H3K9me3  ENCFF716ZGW H3K9me3    Data format 
     ENCFF737OMY_H3K36me3  ENCFF737OMY H3K36me3    Data format 
     ENCFF739EED_H3K4me1  ENCFF739EED H3K4me1    Data format 
     ENCFF765MEO_H3K9ac  ENCFF765MEO H3K9ac    Data format 
     ENCFF769UJD_H3K4me1  ENCFF769UJD H3K4me1    Data format 
     ENCFF772JCX_H3K36me3  ENCFF772JCX H3K36me3    Data format 
     ENCFF814JWS_H3K9me3  ENCFF814JWS H3K9me3    Data format 
     ENCFF825ZXC_H3K36me3  ENCFF825ZXC H3K36me3    Data format 
     ENCFF843AHL_H3K27me3  ENCFF843AHL H3K27me3    Data format 
     ENCFF872RXG_H3K4me1  ENCFF872RXG H3K4me1    Data format 
     ENCFF872UWW_H3K4me1  ENCFF872UWW H3K4me1    Data format 
     ENCFF873GQO_H3K27ac  ENCFF873GQO H3K27ac    Data format 
     ENCFF889EVO_polyA_plus_RNA-seq  ENCFF889EVO polyA_plus_RNA-seq    Data format 
     ENCFF892VWP_H3K4me1  ENCFF892VWP H3K4me1    Data format 
     ENCFF893UGT_polyA_plus_RNA-seq  ENCFF893UGT polyA_plus_RNA-seq    Data format 
     ENCFF900FHF_H3K27me3  ENCFF900FHF H3K27me3    Data format 
     ENCFF920DAK_H3K27me3  ENCFF920DAK H3K27me3    Data format 
     ENCFF920LCS_polyA_plus_RNA-seq  ENCFF920LCS polyA_plus_RNA-seq    Data format 
     ENCFF925VCH_H3K27ac  ENCFF925VCH H3K27ac    Data format 
     ENCFF931CET_H3K9ac  ENCFF931CET H3K9ac    Data format 
     ENCFF937CFG_H3K9ac  ENCFF937CFG H3K9ac    Data format 
     ENCFF943RMY_H3K4me3  ENCFF943RMY H3K4me3    Data format 
     ENCFF958NMP_H3K4me3  ENCFF958NMP H3K4me3    Data format 
     ENCFF966GNO_polyA_plus_RNA-seq  ENCFF966GNO polyA_plus_RNA-seq    Data format 
     ENCFF969TVW_H3K9me3  ENCFF969TVW H3K9me3    Data format 
     ENCFF971FFZ_H3K4me1  ENCFF971FFZ H3K4me1    Data format 
     ENCFF984SGJ_polyA_plus_RNA-seq  ENCFF984SGJ polyA_plus_RNA-seq    Data format 
     ENCFF995AVV_H3K36me3  ENCFF995AVV H3K36me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:HUES6
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF