Sample Summary T-cell Summary Track Settings
 
Roadmap Epigenome T-cell Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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     ENCFF010ZNC_DNase-seq  ENCFF010ZNC DNase-seq    Data format 
     ENCFF015JBK_H3K9me3  ENCFF015JBK H3K9me3    Data format 
     ENCFF034SMA_H3K36me3  ENCFF034SMA H3K36me3    Data format 
     ENCFF035YDA_polyA_plus_RNA-seq  ENCFF035YDA polyA_plus_RNA-seq    Data format 
     ENCFF036TNU_H3K27me3  ENCFF036TNU H3K27me3    Data format 
     ENCFF047SGA_H3K36me3  ENCFF047SGA H3K36me3    Data format 
     ENCFF071AFK_H3K4me3  ENCFF071AFK H3K4me3    Data format 
     ENCFF075EIC_H3K36me3  ENCFF075EIC H3K36me3    Data format 
     ENCFF100NMJ_H3K4me3  ENCFF100NMJ H3K4me3    Data format 
     ENCFF106IWE_H3K36me3  ENCFF106IWE H3K36me3    Data format 
     ENCFF123HEW_H3K9me3  ENCFF123HEW H3K9me3    Data format 
     ENCFF132LRE_H3K4me1  ENCFF132LRE H3K4me1    Data format 
     ENCFF135TZM_H3K9me3  ENCFF135TZM H3K9me3    Data format 
     ENCFF140GFB_H3K27me3  ENCFF140GFB H3K27me3    Data format 
     ENCFF140RIA_H3K9me3  ENCFF140RIA H3K9me3    Data format 
     ENCFF145OIA_H3K4me1  ENCFF145OIA H3K4me1    Data format 
     ENCFF171JCG_H3K36me3  ENCFF171JCG H3K36me3    Data format 
     ENCFF179YSK_polyA_plus_RNA-seq  ENCFF179YSK polyA_plus_RNA-seq    Data format 
     ENCFF182DYP_H3K9me3  ENCFF182DYP H3K9me3    Data format 
     ENCFF273YMG_H3K27me3  ENCFF273YMG H3K27me3    Data format 
     ENCFF282UXS_H3K27me3  ENCFF282UXS H3K27me3    Data format 
     ENCFF283KVN_H3K4me1  ENCFF283KVN H3K4me1    Data format 
     ENCFF310JVO_H3K4me3  ENCFF310JVO H3K4me3    Data format 
     ENCFF313OEB_H3K9me3  ENCFF313OEB H3K9me3    Data format 
     ENCFF314OSR_H3K27ac  ENCFF314OSR H3K27ac    Data format 
     ENCFF326TPI_H3K4me3  ENCFF326TPI H3K4me3    Data format 
     ENCFF340CFZ_H3K4me1  ENCFF340CFZ H3K4me1    Data format 
     ENCFF373ZWX_H3K27me3  ENCFF373ZWX H3K27me3    Data format 
     ENCFF380LRO_H3K36me3  ENCFF380LRO H3K36me3    Data format 
     ENCFF384CAD_H3K4me3  ENCFF384CAD H3K4me3    Data format 
     ENCFF400NBT_DNase-seq  ENCFF400NBT DNase-seq    Data format 
     ENCFF403FQC_H3K36me3  ENCFF403FQC H3K36me3    Data format 
     ENCFF403YDM_H3K4me3  ENCFF403YDM H3K4me3    Data format 
     ENCFF430EGS_H3K36me3  ENCFF430EGS H3K36me3    Data format 
     ENCFF430OAA_H3K27me3  ENCFF430OAA H3K27me3    Data format 
     ENCFF431LFY_H3K27ac  ENCFF431LFY H3K27ac    Data format 
     ENCFF434DHW_WGBS  ENCFF434DHW WGBS    Data format 
     ENCFF452BYK_H3K4me1  ENCFF452BYK H3K4me1    Data format 
     ENCFF461UYC_DNase-seq  ENCFF461UYC DNase-seq    Data format 
     ENCFF470NUO_DNase-seq  ENCFF470NUO DNase-seq    Data format 
     ENCFF470SSF_H3K4me3  ENCFF470SSF H3K4me3    Data format 
     ENCFF477BAL_DNase-seq  ENCFF477BAL DNase-seq    Data format 
     ENCFF494RPZ_H3K4me1  ENCFF494RPZ H3K4me1    Data format 
     ENCFF496JCZ_H3K36me3  ENCFF496JCZ H3K36me3    Data format 
     ENCFF499SKZ_H3K27me3  ENCFF499SKZ H3K27me3    Data format 
     ENCFF505CAY_H3K27me3  ENCFF505CAY H3K27me3    Data format 
     ENCFF508ADO_DNase-seq  ENCFF508ADO DNase-seq    Data format 
     ENCFF534QED_H3K9me3  ENCFF534QED H3K9me3    Data format 
     ENCFF534WDB_WGBS  ENCFF534WDB WGBS    Data format 
     ENCFF540TKM_H3K4me3  ENCFF540TKM H3K4me3    Data format 
     ENCFF564QXU_H3K9me3  ENCFF564QXU H3K9me3    Data format 
     ENCFF574IVA_H3K4me1  ENCFF574IVA H3K4me1    Data format 
     ENCFF578PZY_H3K4me1  ENCFF578PZY H3K4me1    Data format 
     ENCFF599QVB_H3K9me3  ENCFF599QVB H3K9me3    Data format 
     ENCFF601TLP_H3K9me3  ENCFF601TLP H3K9me3    Data format 
     ENCFF622WOH_H3K9me3  ENCFF622WOH H3K9me3    Data format 
     ENCFF623RUP_H3K27me3  ENCFF623RUP H3K27me3    Data format 
     ENCFF629HUK_H3K4me3  ENCFF629HUK H3K4me3    Data format 
     ENCFF643EGV_H3K27ac  ENCFF643EGV H3K27ac    Data format 
     ENCFF652QGB_H3K4me3  ENCFF652QGB H3K4me3    Data format 
     ENCFF686DIQ_H3K4me3  ENCFF686DIQ H3K4me3    Data format 
     ENCFF715AKL_H3K9me3  ENCFF715AKL H3K9me3    Data format 
     ENCFF719ZZK_DNase-seq  ENCFF719ZZK DNase-seq    Data format 
     ENCFF724WAD_H3K4me3  ENCFF724WAD H3K4me3    Data format 
     ENCFF742UCU_H3K4me3  ENCFF742UCU H3K4me3    Data format 
     ENCFF750GKW_H3K27ac  ENCFF750GKW H3K27ac    Data format 
     ENCFF759MNH_H3K4me1  ENCFF759MNH H3K4me1    Data format 
     ENCFF777GAF_H3K36me3  ENCFF777GAF H3K36me3    Data format 
     ENCFF779GHY_H3K36me3  ENCFF779GHY H3K36me3    Data format 
     ENCFF790NEC_H3K27me3  ENCFF790NEC H3K27me3    Data format 
     ENCFF801DBL_DNase-seq  ENCFF801DBL DNase-seq    Data format 
     ENCFF802HWI_H3K36me3  ENCFF802HWI H3K36me3    Data format 
     ENCFF805SZS_polyA_plus_RNA-seq  ENCFF805SZS polyA_plus_RNA-seq    Data format 
     ENCFF813XDK_H3K4me1  ENCFF813XDK H3K4me1    Data format 
     ENCFF814FYK_H3K36me3  ENCFF814FYK H3K36me3    Data format 
     ENCFF831CDV_WGBS  ENCFF831CDV WGBS    Data format 
     ENCFF835JTF_H3K9me3  ENCFF835JTF H3K9me3    Data format 
     ENCFF843ZKX_H3K9me3  ENCFF843ZKX H3K9me3    Data format 
     ENCFF853UUL_H3K4me3  ENCFF853UUL H3K4me3    Data format 
     ENCFF854WDC_H3K4me1  ENCFF854WDC H3K4me1    Data format 
     ENCFF856CUL_H3K27me3  ENCFF856CUL H3K27me3    Data format 
     ENCFF873WAW_H3K36me3  ENCFF873WAW H3K36me3    Data format 
     ENCFF877SFP_H3K27me3  ENCFF877SFP H3K27me3    Data format 
     ENCFF883VLY_H3K36me3  ENCFF883VLY H3K36me3    Data format 
     ENCFF884WBK_H3K27me3  ENCFF884WBK H3K27me3    Data format 
     ENCFF886UIM_H3K4me1  ENCFF886UIM H3K4me1    Data format 
     ENCFF887TRC_polyA_plus_RNA-seq  ENCFF887TRC polyA_plus_RNA-seq    Data format 
     ENCFF896HEY_H3K9me3  ENCFF896HEY H3K9me3    Data format 
     ENCFF907EXG_H3K27me3  ENCFF907EXG H3K27me3    Data format 
     ENCFF941MVA_H3K27me3  ENCFF941MVA H3K27me3    Data format 
     ENCFF942QPG_H3K4me3  ENCFF942QPG H3K4me3    Data format 
     ENCFF946TES_H3K4me3  ENCFF946TES H3K4me3    Data format 
     ENCFF960IPJ_H3K9me3  ENCFF960IPJ H3K9me3    Data format 
     ENCFF970RKW_H3K36me3  ENCFF970RKW H3K36me3    Data format 
     ENCFF975WZW_H3K27me3  ENCFF975WZW H3K27me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:substantia_nigra
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF