Sample Summary UCSF-4 Summary Track Settings
 
Roadmap Epigenome UCSF-4 Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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All subtracks:
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     ENCFF003QDF_H3K9me3  ENCFF003QDF H3K9me3    Data format 
     ENCFF007HOQ_microRNA-seq  ENCFF007HOQ microRNA-seq    Data format 
     ENCFF018YGH_H3K4me1  ENCFF018YGH H3K4me1    Data format 
     ENCFF019AAM_H3K27me3  ENCFF019AAM H3K27me3    Data format 
     ENCFF021VXG_H3K36me3  ENCFF021VXG H3K36me3    Data format 
     ENCFF040VAD_H3K27me3  ENCFF040VAD H3K27me3    Data format 
     ENCFF078OSG_H3K4me3  ENCFF078OSG H3K4me3    Data format 
     ENCFF083GIB_polyA_plus_RNA-seq  ENCFF083GIB polyA_plus_RNA-seq    Data format 
     ENCFF085GHE_H3K27ac  ENCFF085GHE H3K27ac    Data format 
     ENCFF095RTD_H3K4me3  ENCFF095RTD H3K4me3    Data format 
     ENCFF099BHP_H3K9me3  ENCFF099BHP H3K9me3    Data format 
     ENCFF103YCW_H3K9me3  ENCFF103YCW H3K9me3    Data format 
     ENCFF140RTJ_H3K27me3  ENCFF140RTJ H3K27me3    Data format 
     ENCFF145MJJ_polyA_plus_RNA-seq  ENCFF145MJJ polyA_plus_RNA-seq    Data format 
     ENCFF190ZXZ_H3K9me3  ENCFF190ZXZ H3K9me3    Data format 
     ENCFF192IKJ_H3K4me3  ENCFF192IKJ H3K4me3    Data format 
     ENCFF197UGA_H3K4me1  ENCFF197UGA H3K4me1    Data format 
     ENCFF198LPF_H3K27me3  ENCFF198LPF H3K27me3    Data format 
     ENCFF231EBT_H3K4me1  ENCFF231EBT H3K4me1    Data format 
     ENCFF243OEH_H3K4me3  ENCFF243OEH H3K4me3    Data format 
     ENCFF244IOU_H3K4me1  ENCFF244IOU H3K4me1    Data format 
     ENCFF271DSY_H3K4me1  ENCFF271DSY H3K4me1    Data format 
     ENCFF293VYI_microRNA-seq  ENCFF293VYI microRNA-seq    Data format 
     ENCFF311FBU_H3K9me3  ENCFF311FBU H3K9me3    Data format 
     ENCFF318IYE_H3K27me3  ENCFF318IYE H3K27me3    Data format 
     ENCFF322ZWT_H3K9me3  ENCFF322ZWT H3K9me3    Data format 
     ENCFF342EGR_H3K27me3  ENCFF342EGR H3K27me3    Data format 
     ENCFF355MTJ_H3K4me3  ENCFF355MTJ H3K4me3    Data format 
     ENCFF369YHB_polyA_plus_RNA-seq  ENCFF369YHB polyA_plus_RNA-seq    Data format 
     ENCFF374VPQ_H3K4me3  ENCFF374VPQ H3K4me3    Data format 
     ENCFF376NNI_H3K4me3  ENCFF376NNI H3K4me3    Data format 
     ENCFF383QZL_H3K4me1  ENCFF383QZL H3K4me1    Data format 
     ENCFF385ZJV_H3K9me3  ENCFF385ZJV H3K9me3    Data format 
     ENCFF395WJW_H3K4me1  ENCFF395WJW H3K4me1    Data format 
     ENCFF440WDE_microRNA-seq  ENCFF440WDE microRNA-seq    Data format 
     ENCFF450FSF_polyA_plus_RNA-seq  ENCFF450FSF polyA_plus_RNA-seq    Data format 
     ENCFF464BTB_H3K4me3  ENCFF464BTB H3K4me3    Data format 
     ENCFF483HNZ_polyA_plus_RNA-seq  ENCFF483HNZ polyA_plus_RNA-seq    Data format 
     ENCFF497BKN_H3K27me3  ENCFF497BKN H3K27me3    Data format 
     ENCFF497PUZ_H3K9me3  ENCFF497PUZ H3K9me3    Data format 
     ENCFF499GEZ_H3K36me3  ENCFF499GEZ H3K36me3    Data format 
     ENCFF504BRW_H3K27ac  ENCFF504BRW H3K27ac    Data format 
     ENCFF505JFO_H3K9me3  ENCFF505JFO H3K9me3    Data format 
     ENCFF510ROB_H3K4me3  ENCFF510ROB H3K4me3    Data format 
     ENCFF517UEP_H3K27me3  ENCFF517UEP H3K27me3    Data format 
     ENCFF548YPZ_H3K4me3  ENCFF548YPZ H3K4me3    Data format 
     ENCFF572HDC_H3K36me3  ENCFF572HDC H3K36me3    Data format 
     ENCFF579PTY_H3K9me3  ENCFF579PTY H3K9me3    Data format 
     ENCFF582KKP_H3K9me3  ENCFF582KKP H3K9me3    Data format 
     ENCFF588TQO_microRNA-seq  ENCFF588TQO microRNA-seq    Data format 
     ENCFF592SGV_H3K4me3  ENCFF592SGV H3K4me3    Data format 
     ENCFF603SAT_H3K27me3  ENCFF603SAT H3K27me3    Data format 
     ENCFF621FFU_H3K36me3  ENCFF621FFU H3K36me3    Data format 
     ENCFF624WAX_H3K36me3  ENCFF624WAX H3K36me3    Data format 
     ENCFF626EKV_H3K4me1  ENCFF626EKV H3K4me1    Data format 
     ENCFF653EHQ_H3K36me3  ENCFF653EHQ H3K36me3    Data format 
     ENCFF660KBO_H3K36me3  ENCFF660KBO H3K36me3    Data format 
     ENCFF664UWQ_H3K27me3  ENCFF664UWQ H3K27me3    Data format 
     ENCFF679FGW_H3K36me3  ENCFF679FGW H3K36me3    Data format 
     ENCFF688EEP_microRNA-seq  ENCFF688EEP microRNA-seq    Data format 
     ENCFF715QDF_H3K36me3  ENCFF715QDF H3K36me3    Data format 
     ENCFF721TDN_H3K4me3  ENCFF721TDN H3K4me3    Data format 
     ENCFF780LQH_H3K27ac  ENCFF780LQH H3K27ac    Data format 
     ENCFF802QEM_H3K27me3  ENCFF802QEM H3K27me3    Data format 
     ENCFF807KGX_H3K4me1  ENCFF807KGX H3K4me1    Data format 
     ENCFF818MQG_H3K36me3  ENCFF818MQG H3K36me3    Data format 
     ENCFF851QCO_H3K27me3  ENCFF851QCO H3K27me3    Data format 
     ENCFF866FPZ_H3K27ac  ENCFF866FPZ H3K27ac    Data format 
     ENCFF873PZH_polyA_plus_RNA-seq  ENCFF873PZH polyA_plus_RNA-seq    Data format 
     ENCFF879PAH_H3K4me1  ENCFF879PAH H3K4me1    Data format 
     ENCFF880THI_H3K36me3  ENCFF880THI H3K36me3    Data format 
     ENCFF900LBN_H3K4me1  ENCFF900LBN H3K4me1    Data format 
     ENCFF926LYH_microRNA-seq  ENCFF926LYH microRNA-seq    Data format 
     ENCFF936FLZ_H3K9me3  ENCFF936FLZ H3K9me3    Data format 
     ENCFF953HGF_H3K4me1  ENCFF953HGF H3K4me1    Data format 
     ENCFF962XNB_polyA_plus_RNA-seq  ENCFF962XNB polyA_plus_RNA-seq    Data format 
     ENCFF963YRQ_microRNA-seq  ENCFF963YRQ microRNA-seq    Data format 
     ENCFF978HBR_H3K36me3  ENCFF978HBR H3K36me3    Data format 
     ENCFF990BDR_microRNA-seq  ENCFF990BDR microRNA-seq    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:trophoblast_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF