Sample Summary adipocyte Summary Track Settings
 
Roadmap Epigenome adipocyte Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
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Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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     ENCFF017DQP_H3K36me3  ENCFF017DQP H3K36me3    Data format 
     ENCFF020CKV_H3K9ac  ENCFF020CKV H3K9ac    Data format 
     ENCFF058TOO_H3K4me1  ENCFF058TOO H3K4me1    Data format 
     ENCFF062LNJ_H3K27me3  ENCFF062LNJ H3K27me3    Data format 
     ENCFF069RMS_H3K27me3  ENCFF069RMS H3K27me3    Data format 
     ENCFF070MIL_H3K4me1  ENCFF070MIL H3K4me1    Data format 
     ENCFF081XES_H3K36me3  ENCFF081XES H3K36me3    Data format 
     ENCFF093WRH_H3K9ac  ENCFF093WRH H3K9ac    Data format 
     ENCFF103GXY_H3K9me3  ENCFF103GXY H3K9me3    Data format 
     ENCFF104KIQ_H3K36me3  ENCFF104KIQ H3K36me3    Data format 
     ENCFF130HGC_H3K27me3  ENCFF130HGC H3K27me3    Data format 
     ENCFF131ITN_H3K9me3  ENCFF131ITN H3K9me3    Data format 
     ENCFF141JTS_H3K9ac  ENCFF141JTS H3K9ac    Data format 
     ENCFF148XBJ_H3K9ac  ENCFF148XBJ H3K9ac    Data format 
     ENCFF158TAZ_H3K36me3  ENCFF158TAZ H3K36me3    Data format 
     ENCFF162UJQ_H3K9me3  ENCFF162UJQ H3K9me3    Data format 
     ENCFF175WUE_H3K9ac  ENCFF175WUE H3K9ac    Data format 
     ENCFF180JGB_H3K4me1  ENCFF180JGB H3K4me1    Data format 
     ENCFF191RDZ_H3K4me3  ENCFF191RDZ H3K4me3    Data format 
     ENCFF213WCI_H3K9me3  ENCFF213WCI H3K9me3    Data format 
     ENCFF217GMU_H3K27me3  ENCFF217GMU H3K27me3    Data format 
     ENCFF235WYQ_H3K27me3  ENCFF235WYQ H3K27me3    Data format 
     ENCFF236BNK_H3K4me3  ENCFF236BNK H3K4me3    Data format 
     ENCFF240KPE_H3K36me3  ENCFF240KPE H3K36me3    Data format 
     ENCFF248WFA_H3K27me3  ENCFF248WFA H3K27me3    Data format 
     ENCFF255MNW_H3K9me3  ENCFF255MNW H3K9me3    Data format 
     ENCFF271EDL_H3K9ac  ENCFF271EDL H3K9ac    Data format 
     ENCFF273CRB_H3K4me3  ENCFF273CRB H3K4me3    Data format 
     ENCFF280HUX_H3K36me3  ENCFF280HUX H3K36me3    Data format 
     ENCFF301QCP_H3K4me3  ENCFF301QCP H3K4me3    Data format 
     ENCFF320WNY_H3K4me1  ENCFF320WNY H3K4me1    Data format 
     ENCFF356XEV_H3K27me3  ENCFF356XEV H3K27me3    Data format 
     ENCFF382FFK_H3K27me3  ENCFF382FFK H3K27me3    Data format 
     ENCFF390NXX_H3K27me3  ENCFF390NXX H3K27me3    Data format 
     ENCFF415PKP_H3K4me3  ENCFF415PKP H3K4me3    Data format 
     ENCFF434WGF_H3K4me1  ENCFF434WGF H3K4me1    Data format 
     ENCFF441YPX_H3K9ac  ENCFF441YPX H3K9ac    Data format 
     ENCFF446UUC_H3K36me3  ENCFF446UUC H3K36me3    Data format 
     ENCFF450NIQ_H3K9ac  ENCFF450NIQ H3K9ac    Data format 
     ENCFF457ODK_H3K4me1  ENCFF457ODK H3K4me1    Data format 
     ENCFF483NKN_H3K4me1  ENCFF483NKN H3K4me1    Data format 
     ENCFF490THP_H3K9me3  ENCFF490THP H3K9me3    Data format 
     ENCFF509NMD_H3K9me3  ENCFF509NMD H3K9me3    Data format 
     ENCFF543CLW_H3K4me3  ENCFF543CLW H3K4me3    Data format 
     ENCFF545DRY_H3K9ac  ENCFF545DRY H3K9ac    Data format 
     ENCFF561GOP_H3K4me3  ENCFF561GOP H3K4me3    Data format 
     ENCFF567OFD_H3K36me3  ENCFF567OFD H3K36me3    Data format 
     ENCFF569QRE_H3K9ac  ENCFF569QRE H3K9ac    Data format 
     ENCFF573BYG_H3K4me3  ENCFF573BYG H3K4me3    Data format 
     ENCFF582VVU_H3K9me3  ENCFF582VVU H3K9me3    Data format 
     ENCFF607AVH_H3K27me3  ENCFF607AVH H3K27me3    Data format 
     ENCFF609XDE_H3K9ac  ENCFF609XDE H3K9ac    Data format 
     ENCFF620XVA_H3K27me3  ENCFF620XVA H3K27me3    Data format 
     ENCFF644EFU_H3K4me3  ENCFF644EFU H3K4me3    Data format 
     ENCFF691WBL_H3K4me3  ENCFF691WBL H3K4me3    Data format 
     ENCFF699CCH_H3K9me3  ENCFF699CCH H3K9me3    Data format 
     ENCFF721EPB_H3K4me3  ENCFF721EPB H3K4me3    Data format 
     ENCFF748EKR_H3K4me1  ENCFF748EKR H3K4me1    Data format 
     ENCFF750BQT_H3K9me3  ENCFF750BQT H3K9me3    Data format 
     ENCFF763EPS_H3K36me3  ENCFF763EPS H3K36me3    Data format 
     ENCFF775AYU_H3K27me3  ENCFF775AYU H3K27me3    Data format 
     ENCFF776EJA_H3K36me3  ENCFF776EJA H3K36me3    Data format 
     ENCFF783NGV_H3K4me1  ENCFF783NGV H3K4me1    Data format 
     ENCFF784WFJ_H3K9me3  ENCFF784WFJ H3K9me3    Data format 
     ENCFF789UDR_H3K36me3  ENCFF789UDR H3K36me3    Data format 
     ENCFF791NIH_H3K4me1  ENCFF791NIH H3K4me1    Data format 
     ENCFF806GOD_H3K9ac  ENCFF806GOD H3K9ac    Data format 
     ENCFF873HHK_H3K4me1  ENCFF873HHK H3K4me1    Data format 
     ENCFF955WPJ_H3K9me3  ENCFF955WPJ H3K9me3    Data format 
     ENCFF968LWB_H3K4me3  ENCFF968LWB H3K4me3    Data format 
     ENCFF971HUA_H3K4me1  ENCFF971HUA H3K4me1    Data format 
    
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF