Sample Summary adipose_tissue Summary Track Settings
 
Roadmap Epigenome adipose_tissue Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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     ENCFF030MFJ_polyA_plus_RNA-seq  ENCFF030MFJ polyA_plus_RNA-seq    Data format 
     ENCFF037MFY_polyA_plus_RNA-seq  ENCFF037MFY polyA_plus_RNA-seq    Data format 
     ENCFF073ZVL_polyA_plus_RNA-seq  ENCFF073ZVL polyA_plus_RNA-seq    Data format 
     ENCFF080VWL_polyA_plus_RNA-seq  ENCFF080VWL polyA_plus_RNA-seq    Data format 
     ENCFF206OGU_polyA_plus_RNA-seq  ENCFF206OGU polyA_plus_RNA-seq    Data format 
     ENCFF267DQT_polyA_plus_RNA-seq  ENCFF267DQT polyA_plus_RNA-seq    Data format 
     ENCFF337QLO_polyA_plus_RNA-seq  ENCFF337QLO polyA_plus_RNA-seq    Data format 
     ENCFF360EGM_WGBS  ENCFF360EGM WGBS    Data format 
     ENCFF384TPI_polyA_plus_RNA-seq  ENCFF384TPI polyA_plus_RNA-seq    Data format 
     ENCFF487ZIS_polyA_plus_RNA-seq  ENCFF487ZIS polyA_plus_RNA-seq    Data format 
     ENCFF490HKH_polyA_plus_RNA-seq  ENCFF490HKH polyA_plus_RNA-seq    Data format 
     ENCFF508RCQ_polyA_plus_RNA-seq  ENCFF508RCQ polyA_plus_RNA-seq    Data format 
     ENCFF601OQU_polyA_plus_RNA-seq  ENCFF601OQU polyA_plus_RNA-seq    Data format 
     ENCFF605IMU_polyA_plus_RNA-seq  ENCFF605IMU polyA_plus_RNA-seq    Data format 
     ENCFF625DTY_polyA_plus_RNA-seq  ENCFF625DTY polyA_plus_RNA-seq    Data format 
     ENCFF648TPI_H3K27ac  ENCFF648TPI H3K27ac    Data format 
     ENCFF689QGJ_polyA_plus_RNA-seq  ENCFF689QGJ polyA_plus_RNA-seq    Data format 
     ENCFF697OJB_polyA_plus_RNA-seq  ENCFF697OJB polyA_plus_RNA-seq    Data format 
     ENCFF746SPP_H3K27ac  ENCFF746SPP H3K27ac    Data format 
     ENCFF757LUK_polyA_plus_RNA-seq  ENCFF757LUK polyA_plus_RNA-seq    Data format 
     ENCFF774AHE_polyA_plus_RNA-seq  ENCFF774AHE polyA_plus_RNA-seq    Data format 
     ENCFF793CJW_polyA_plus_RNA-seq  ENCFF793CJW polyA_plus_RNA-seq    Data format 
     ENCFF800YZH_polyA_plus_RNA-seq  ENCFF800YZH polyA_plus_RNA-seq    Data format 
     ENCFF824VRM_H3K27ac  ENCFF824VRM H3K27ac    Data format 
     ENCFF846VWM_polyA_plus_RNA-seq  ENCFF846VWM polyA_plus_RNA-seq    Data format 
     ENCFF884KSN_WGBS  ENCFF884KSN WGBS    Data format 
     ENCFF921HGY_polyA_plus_RNA-seq  ENCFF921HGY polyA_plus_RNA-seq    Data format 
     ENCFF922YMQ_H3K27ac  ENCFF922YMQ H3K27ac    Data format 
     ENCFF948DNV_polyA_plus_RNA-seq  ENCFF948DNV polyA_plus_RNA-seq    Data format 
     ENCFF985SGT_polyA_plus_RNA-seq  ENCFF985SGT polyA_plus_RNA-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:adipocyte
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF