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Roadmap Epigenome amnion Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF032FEA_H3K4me1  ENCFF032FEA H3K4me1    Data format 
     ENCFF043QRF_microRNA-seq  ENCFF043QRF microRNA-seq    Data format 
     ENCFF059WCE_microRNA-seq  ENCFF059WCE microRNA-seq    Data format 
     ENCFF081HWD_polyA_plus_RNA-seq  ENCFF081HWD polyA_plus_RNA-seq    Data format 
     ENCFF091UEE_H3K27me3  ENCFF091UEE H3K27me3    Data format 
     ENCFF099KAJ_H3K4me1  ENCFF099KAJ H3K4me1    Data format 
     ENCFF114KOS_H3K9me3  ENCFF114KOS H3K9me3    Data format 
     ENCFF121XCE_microRNA-seq  ENCFF121XCE microRNA-seq    Data format 
     ENCFF122LKO_H3K27me3  ENCFF122LKO H3K27me3    Data format 
     ENCFF170XED_H3K4me3  ENCFF170XED H3K4me3    Data format 
     ENCFF189QPA_polyA_plus_RNA-seq  ENCFF189QPA polyA_plus_RNA-seq    Data format 
     ENCFF198HPM_polyA_plus_RNA-seq  ENCFF198HPM polyA_plus_RNA-seq    Data format 
     ENCFF211RIL_H3K4me3  ENCFF211RIL H3K4me3    Data format 
     ENCFF226LCR_microRNA-seq  ENCFF226LCR microRNA-seq    Data format 
     ENCFF242GTB_H3K36me3  ENCFF242GTB H3K36me3    Data format 
     ENCFF255ORO_polyA_plus_RNA-seq  ENCFF255ORO polyA_plus_RNA-seq    Data format 
     ENCFF268YQQ_H3K9me3  ENCFF268YQQ H3K9me3    Data format 
     ENCFF269HTK_microRNA-seq  ENCFF269HTK microRNA-seq    Data format 
     ENCFF292YCT_microRNA-seq  ENCFF292YCT microRNA-seq    Data format 
     ENCFF317HRT_H3K36me3  ENCFF317HRT H3K36me3    Data format 
     ENCFF360WKX_polyA_plus_RNA-seq  ENCFF360WKX polyA_plus_RNA-seq    Data format 
     ENCFF376EKX_polyA_plus_RNA-seq  ENCFF376EKX polyA_plus_RNA-seq    Data format 
     ENCFF398AAM_polyA_plus_RNA-seq  ENCFF398AAM polyA_plus_RNA-seq    Data format 
     ENCFF417SUP_H3K27ac  ENCFF417SUP H3K27ac    Data format 
     ENCFF437CFO_H3K27ac  ENCFF437CFO H3K27ac    Data format 
     ENCFF439BJH_polyA_plus_RNA-seq  ENCFF439BJH polyA_plus_RNA-seq    Data format 
     ENCFF456YYL_H3K4me3  ENCFF456YYL H3K4me3    Data format 
     ENCFF546WRX_H3K27ac  ENCFF546WRX H3K27ac    Data format 
     ENCFF556VMP_H3K27me3  ENCFF556VMP H3K27me3    Data format 
     ENCFF602ALA_polyA_plus_RNA-seq  ENCFF602ALA polyA_plus_RNA-seq    Data format 
     ENCFF610OOF_microRNA-seq  ENCFF610OOF microRNA-seq    Data format 
     ENCFF628SPP_H3K9me3  ENCFF628SPP H3K9me3    Data format 
     ENCFF701YMK_polyA_plus_RNA-seq  ENCFF701YMK polyA_plus_RNA-seq    Data format 
     ENCFF740ZOL_H3K9me3  ENCFF740ZOL H3K9me3    Data format 
     ENCFF761ZQJ_H3K27me3  ENCFF761ZQJ H3K27me3    Data format 
     ENCFF793PHT_H3K4me3  ENCFF793PHT H3K4me3    Data format 
     ENCFF806YPO_microRNA-seq  ENCFF806YPO microRNA-seq    Data format 
     ENCFF815TUQ_H3K4me1  ENCFF815TUQ H3K4me1    Data format 
     ENCFF817FGC_H3K4me1  ENCFF817FGC H3K4me1    Data format 
     ENCFF826GCE_H3K36me3  ENCFF826GCE H3K36me3    Data format 
     ENCFF870KNX_polyA_plus_RNA-seq  ENCFF870KNX polyA_plus_RNA-seq    Data format 
     ENCFF880HWK_microRNA-seq  ENCFF880HWK microRNA-seq    Data format 
     ENCFF911MLF_microRNA-seq  ENCFF911MLF microRNA-seq    Data format 
     ENCFF923UXA_H3K27ac  ENCFF923UXA H3K27ac    Data format 
     ENCFF950QHC_microRNA-seq  ENCFF950QHC microRNA-seq    Data format 
     ENCFF963LIO_H3K36me3  ENCFF963LIO H3K36me3    Data format 
     ENCFF975OXW_microRNA-seq  ENCFF975OXW microRNA-seq    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:adrenal_gland
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF