Sample Summary angular_gyrus Summary Track Settings
 
Roadmap Epigenome angular_gyrus Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
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     ENCFF027RWI_H3K4me1  ENCFF027RWI H3K4me1    Data format 
     ENCFF048JVO_H3K9ac  ENCFF048JVO H3K9ac    Data format 
     ENCFF081IBY_H3K4me3  ENCFF081IBY H3K4me3    Data format 
     ENCFF101XFJ_H3K36me3  ENCFF101XFJ H3K36me3    Data format 
     ENCFF127VGX_H3K36me3  ENCFF127VGX H3K36me3    Data format 
     ENCFF143WOD_H3K4me1  ENCFF143WOD H3K4me1    Data format 
     ENCFF167ZYG_H3K27ac  ENCFF167ZYG H3K27ac    Data format 
     ENCFF176ZBH_H3K9ac  ENCFF176ZBH H3K9ac    Data format 
     ENCFF185YGA_H3K27me3  ENCFF185YGA H3K27me3    Data format 
     ENCFF214WDH_H3K4me3  ENCFF214WDH H3K4me3    Data format 
     ENCFF248NGW_H3K9me3  ENCFF248NGW H3K9me3    Data format 
     ENCFF254GZF_H3K36me3  ENCFF254GZF H3K36me3    Data format 
     ENCFF257QES_H3K27ac  ENCFF257QES H3K27ac    Data format 
     ENCFF265ZLK_H3K9me3  ENCFF265ZLK H3K9me3    Data format 
     ENCFF267WYA_H3K4me1  ENCFF267WYA H3K4me1    Data format 
     ENCFF272ZKG_H3K27ac  ENCFF272ZKG H3K27ac    Data format 
     ENCFF284EJX_H3K27ac  ENCFF284EJX H3K27ac    Data format 
     ENCFF315NRF_H3K9ac  ENCFF315NRF H3K9ac    Data format 
     ENCFF316LCE_H3K9me3  ENCFF316LCE H3K9me3    Data format 
     ENCFF318NCZ_H3K4me1  ENCFF318NCZ H3K4me1    Data format 
     ENCFF326XDV_H3K4me1  ENCFF326XDV H3K4me1    Data format 
     ENCFF373NQQ_H3K36me3  ENCFF373NQQ H3K36me3    Data format 
     ENCFF379KCI_H3K4me1  ENCFF379KCI H3K4me1    Data format 
     ENCFF408NLE_H3K36me3  ENCFF408NLE H3K36me3    Data format 
     ENCFF414NQV_H3K36me3  ENCFF414NQV H3K36me3    Data format 
     ENCFF434ALZ_H3K36me3  ENCFF434ALZ H3K36me3    Data format 
     ENCFF438TGS_H3K27me3  ENCFF438TGS H3K27me3    Data format 
     ENCFF518CHL_H3K27ac  ENCFF518CHL H3K27ac    Data format 
     ENCFF525LZQ_H3K4me1  ENCFF525LZQ H3K4me1    Data format 
     ENCFF551IMQ_H3K4me3  ENCFF551IMQ H3K4me3    Data format 
     ENCFF578WHD_H3K4me1  ENCFF578WHD H3K4me1    Data format 
     ENCFF587FHO_H3K9ac  ENCFF587FHO H3K9ac    Data format 
     ENCFF587PUE_H3K9me3  ENCFF587PUE H3K9me3    Data format 
     ENCFF643TWJ_H3K4me3  ENCFF643TWJ H3K4me3    Data format 
     ENCFF671XER_H3K27me3  ENCFF671XER H3K27me3    Data format 
     ENCFF701ISS_H3K9me3  ENCFF701ISS H3K9me3    Data format 
     ENCFF721FMJ_H3K27ac  ENCFF721FMJ H3K27ac    Data format 
     ENCFF726XBL_H3K27ac  ENCFF726XBL H3K27ac    Data format 
     ENCFF756ZSP_H3K36me3  ENCFF756ZSP H3K36me3    Data format 
     ENCFF797WZE_H3K4me3  ENCFF797WZE H3K4me3    Data format 
     ENCFF825COY_H3K4me3  ENCFF825COY H3K4me3    Data format 
     ENCFF834YLW_H3K9me3  ENCFF834YLW H3K9me3    Data format 
     ENCFF854IJU_H3K4me3  ENCFF854IJU H3K4me3    Data format 
     ENCFF871LEV_H3K27ac  ENCFF871LEV H3K27ac    Data format 
     ENCFF886XTQ_H3K9me3  ENCFF886XTQ H3K9me3    Data format 
     ENCFF941AKN_H3K4me3  ENCFF941AKN H3K4me3    Data format 
     ENCFF960PLM_H3K27me3  ENCFF960PLM H3K27me3    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:plus_strand_signal_of_all_reads
Sample:amnion
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF