Sample Summary aorta Summary Track Settings
 
Roadmap Epigenome aorta Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

Display mode:       Reset to defaults

Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF004JWB_H3K36me3  ENCFF004JWB H3K36me3    Data format 
     ENCFF039JTK_H3K27ac  ENCFF039JTK H3K27ac    Data format 
     ENCFF059ZTM_H3K4me3  ENCFF059ZTM H3K4me3    Data format 
     ENCFF070SZT_H3K9me3  ENCFF070SZT H3K9me3    Data format 
     ENCFF095GAS_polyA_plus_RNA-seq  ENCFF095GAS polyA_plus_RNA-seq    Data format 
     ENCFF096XYW_H3K4me3  ENCFF096XYW H3K4me3    Data format 
     ENCFF115EHH_H3K9me3  ENCFF115EHH H3K9me3    Data format 
     ENCFF126LKO_H3K27ac  ENCFF126LKO H3K27ac    Data format 
     ENCFF135BON_H3K36me3  ENCFF135BON H3K36me3    Data format 
     ENCFF155UGK_H3K36me3  ENCFF155UGK H3K36me3    Data format 
     ENCFF182VPC_H3K27me3  ENCFF182VPC H3K27me3    Data format 
     ENCFF192ZXQ_H3K4me1  ENCFF192ZXQ H3K4me1    Data format 
     ENCFF200JFT_H3K4me1  ENCFF200JFT H3K4me1    Data format 
     ENCFF203VFK_polyA_plus_RNA-seq  ENCFF203VFK polyA_plus_RNA-seq    Data format 
     ENCFF204OAN_H3K9me3  ENCFF204OAN H3K9me3    Data format 
     ENCFF205TSG_H3K4me1  ENCFF205TSG H3K4me1    Data format 
     ENCFF228MLZ_H3K27ac  ENCFF228MLZ H3K27ac    Data format 
     ENCFF261LVJ_H3K4me1  ENCFF261LVJ H3K4me1    Data format 
     ENCFF281FXG_H3K36me3  ENCFF281FXG H3K36me3    Data format 
     ENCFF296KKE_H3K4me1  ENCFF296KKE H3K4me1    Data format 
     ENCFF328LOC_H3K4me1  ENCFF328LOC H3K4me1    Data format 
     ENCFF328OPT_H3K4me3  ENCFF328OPT H3K4me3    Data format 
     ENCFF368RDB_H3K27me3  ENCFF368RDB H3K27me3    Data format 
     ENCFF380ABD_polyA_plus_RNA-seq  ENCFF380ABD polyA_plus_RNA-seq    Data format 
     ENCFF383WLC_H3K9me3  ENCFF383WLC H3K9me3    Data format 
     ENCFF386YGS_polyA_plus_RNA-seq  ENCFF386YGS polyA_plus_RNA-seq    Data format 
     ENCFF387RBP_polyA_plus_RNA-seq  ENCFF387RBP polyA_plus_RNA-seq    Data format 
     ENCFF397BWR_H3K27me3  ENCFF397BWR H3K27me3    Data format 
     ENCFF432XVD_H3K4me3  ENCFF432XVD H3K4me3    Data format 
     ENCFF452VYO_polyA_plus_RNA-seq  ENCFF452VYO polyA_plus_RNA-seq    Data format 
     ENCFF465LKH_H3K4me3  ENCFF465LKH H3K4me3    Data format 
     ENCFF527MWQ_H3K36me3  ENCFF527MWQ H3K36me3    Data format 
     ENCFF574YFN_H3K36me3  ENCFF574YFN H3K36me3    Data format 
     ENCFF581WZS_H3K27me3  ENCFF581WZS H3K27me3    Data format 
     ENCFF620NLZ_H3K27me3  ENCFF620NLZ H3K27me3    Data format 
     ENCFF624LJY_H3K4me3  ENCFF624LJY H3K4me3    Data format 
     ENCFF640NVF_H3K4me3  ENCFF640NVF H3K4me3    Data format 
     ENCFF651QMY_H3K27ac  ENCFF651QMY H3K27ac    Data format 
     ENCFF655CSH_polyA_plus_RNA-seq  ENCFF655CSH polyA_plus_RNA-seq    Data format 
     ENCFF691IIG_H3K27ac  ENCFF691IIG H3K27ac    Data format 
     ENCFF763TYO_H3K27ac  ENCFF763TYO H3K27ac    Data format 
     ENCFF767BKU_H3K36me3  ENCFF767BKU H3K36me3    Data format 
     ENCFF785VVE_H3K27me3  ENCFF785VVE H3K27me3    Data format 
     ENCFF787NDZ_H3K4me1  ENCFF787NDZ H3K4me1    Data format 
     ENCFF797LQJ_polyA_plus_RNA-seq  ENCFF797LQJ polyA_plus_RNA-seq    Data format 
     ENCFF800PJD_H3K27ac  ENCFF800PJD H3K27ac    Data format 
     ENCFF805RHU_H3K4me1  ENCFF805RHU H3K4me1    Data format 
     ENCFF819LXH_H3K27me3  ENCFF819LXH H3K27me3    Data format 
     ENCFF847IOC_H3K4me3  ENCFF847IOC H3K4me3    Data format 
     ENCFF879DEA_H3K27me3  ENCFF879DEA H3K27me3    Data format 
     ENCFF906TUV_polyA_plus_RNA-seq  ENCFF906TUV polyA_plus_RNA-seq    Data format 
     ENCFF933UDE_polyA_plus_RNA-seq  ENCFF933UDE polyA_plus_RNA-seq    Data format 
     ENCFF945VBC_polyA_plus_RNA-seq  ENCFF945VBC polyA_plus_RNA-seq    Data format 
     ENCFF967MND_H3K27ac  ENCFF967MND H3K27ac    Data format 
     ENCFF968EQY_polyA_plus_RNA-seq  ENCFF968EQY polyA_plus_RNA-seq    Data format 
     ENCFF968LVP_H3K36me3  ENCFF968LVP H3K36me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:angular_gyrus
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF