Sample Summary astrocyte Summary Track Settings
 
Roadmap Epigenome astrocyte Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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     ENCFF041QXY_microRNA-seq  ENCFF041QXY microRNA-seq    Data format 
     ENCFF179LJK_microRNA-seq  ENCFF179LJK microRNA-seq    Data format 
     ENCFF238IMX_microRNA-seq  ENCFF238IMX microRNA-seq    Data format 
     ENCFF270EVC_polyA_plus_RNA-seq  ENCFF270EVC polyA_plus_RNA-seq    Data format 
     ENCFF349KBO_polyA_plus_RNA-seq  ENCFF349KBO polyA_plus_RNA-seq    Data format 
     ENCFF535DRU_polyA_plus_RNA-seq  ENCFF535DRU polyA_plus_RNA-seq    Data format 
     ENCFF629GJC_microRNA-seq  ENCFF629GJC microRNA-seq    Data format 
    
Metadata:
Assay:microRNA-seq
OutputType:plus_strand_signal_of_unique_reads
Sample:area_11_of_Brodmann
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF