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Roadmap Epigenome brain Summary

Track collection: Sample Summary

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     ENCFF003FBE_DNase-seq  ENCFF003FBE DNase-seq    Data format 
     ENCFF011TXV_H3K36me3  ENCFF011TXV H3K36me3    Data format 
     ENCFF019GQD_H3K4me1  ENCFF019GQD H3K4me1    Data format 
     ENCFF019PQI_DNase-seq  ENCFF019PQI DNase-seq    Data format 
     ENCFF025XZI_H3K27me3  ENCFF025XZI H3K27me3    Data format 
     ENCFF055HFN_H3K9me3  ENCFF055HFN H3K9me3    Data format 
     ENCFF055RCC_DNase-seq  ENCFF055RCC DNase-seq    Data format 
     ENCFF061SBX_H3K36me3  ENCFF061SBX H3K36me3    Data format 
     ENCFF062GSU_DNase-seq  ENCFF062GSU DNase-seq    Data format 
     ENCFF063KTB_microRNA-seq  ENCFF063KTB microRNA-seq    Data format 
     ENCFF064KBT_DNase-seq  ENCFF064KBT DNase-seq    Data format 
     ENCFF066JJA_H3K4me3  ENCFF066JJA H3K4me3    Data format 
     ENCFF072FOC_H3K9me3  ENCFF072FOC H3K9me3    Data format 
     ENCFF078TYR_H3K36me3  ENCFF078TYR H3K36me3    Data format 
     ENCFF081QNC_H3K4me3  ENCFF081QNC H3K4me3    Data format 
     ENCFF109KHT_DNase-seq  ENCFF109KHT DNase-seq    Data format 
     ENCFF116VDC_H3K4me1  ENCFF116VDC H3K4me1    Data format 
     ENCFF126OVP_H3K4me3  ENCFF126OVP H3K4me3    Data format 
     ENCFF134RIU_H3K27me3  ENCFF134RIU H3K27me3    Data format 
     ENCFF135VPT_H3K36me3  ENCFF135VPT H3K36me3    Data format 
     ENCFF136UYT_microRNA-seq  ENCFF136UYT microRNA-seq    Data format 
     ENCFF139FPN_H3K27me3  ENCFF139FPN H3K27me3    Data format 
     ENCFF146GDG_H3K36me3  ENCFF146GDG H3K36me3    Data format 
     ENCFF158COU_H3K36me3  ENCFF158COU H3K36me3    Data format 
     ENCFF161FFM_H3K4me1  ENCFF161FFM H3K4me1    Data format 
     ENCFF162MEZ_H3K9me3  ENCFF162MEZ H3K9me3    Data format 
     ENCFF164OZL_H3K27me3  ENCFF164OZL H3K27me3    Data format 
     ENCFF170OOR_H3K4me1  ENCFF170OOR H3K4me1    Data format 
     ENCFF204VPY_H3K27me3  ENCFF204VPY H3K27me3    Data format 
     ENCFF214OOH_H3K36me3  ENCFF214OOH H3K36me3    Data format 
     ENCFF214ZVV_H3K27me3  ENCFF214ZVV H3K27me3    Data format 
     ENCFF232OQT_H3K4me1  ENCFF232OQT H3K4me1    Data format 
     ENCFF273DKS_H3K27me3  ENCFF273DKS H3K27me3    Data format 
     ENCFF302SHC_H3K4me1  ENCFF302SHC H3K4me1    Data format 
     ENCFF306NZA_H3K36me3  ENCFF306NZA H3K36me3    Data format 
     ENCFF306OZT_DNase-seq  ENCFF306OZT DNase-seq    Data format 
     ENCFF318RVO_H3K4me3  ENCFF318RVO H3K4me3    Data format 
     ENCFF321KUJ_H3K4me1  ENCFF321KUJ H3K4me1    Data format 
     ENCFF339POO_H3K27me3  ENCFF339POO H3K27me3    Data format 
     ENCFF348ILL_microRNA-seq  ENCFF348ILL microRNA-seq    Data format 
     ENCFF355VQP_microRNA-seq  ENCFF355VQP microRNA-seq    Data format 
     ENCFF360XRU_H3K4me1  ENCFF360XRU H3K4me1    Data format 
     ENCFF361UTR_DNase-seq  ENCFF361UTR DNase-seq    Data format 
     ENCFF363XWV_DNase-seq  ENCFF363XWV DNase-seq    Data format 
     ENCFF364TJZ_H3K27me3  ENCFF364TJZ H3K27me3    Data format 
     ENCFF375CAR_H3K9me3  ENCFF375CAR H3K9me3    Data format 
     ENCFF378OWK_DNase-seq  ENCFF378OWK DNase-seq    Data format 
     ENCFF381DVP_H3K9me3  ENCFF381DVP H3K9me3    Data format 
     ENCFF389LZZ_H3K4me3  ENCFF389LZZ H3K4me3    Data format 
     ENCFF407RTD_H3K4me1  ENCFF407RTD H3K4me1    Data format 
     ENCFF409WRK_H3K4me3  ENCFF409WRK H3K4me3    Data format 
     ENCFF414RDI_H3K36me3  ENCFF414RDI H3K36me3    Data format 
     ENCFF417QBG_H3K9me3  ENCFF417QBG H3K9me3    Data format 
     ENCFF418YEC_H3K27me3  ENCFF418YEC H3K27me3    Data format 
     ENCFF434UWN_microRNA-seq  ENCFF434UWN microRNA-seq    Data format 
     ENCFF448HFZ_H3K4me3  ENCFF448HFZ H3K4me3    Data format 
     ENCFF459EIA_microRNA-seq  ENCFF459EIA microRNA-seq    Data format 
     ENCFF465AON_H3K9me3  ENCFF465AON H3K9me3    Data format 
     ENCFF488EYI_H3K4me3  ENCFF488EYI H3K4me3    Data format 
     ENCFF495TLF_H3K9me3  ENCFF495TLF H3K9me3    Data format 
     ENCFF497JIB_H3K4me1  ENCFF497JIB H3K4me1    Data format 
     ENCFF499HWN_H3K27me3  ENCFF499HWN H3K27me3    Data format 
     ENCFF503ZTL_DNase-seq  ENCFF503ZTL DNase-seq    Data format 
     ENCFF534LWU_H3K9me3  ENCFF534LWU H3K9me3    Data format 
     ENCFF536FNG_DNase-seq  ENCFF536FNG DNase-seq    Data format 
     ENCFF550MOB_H3K27me3  ENCFF550MOB H3K27me3    Data format 
     ENCFF584OMG_H3K4me1  ENCFF584OMG H3K4me1    Data format 
     ENCFF588ILB_H3K9me3  ENCFF588ILB H3K9me3    Data format 
     ENCFF593ZPC_DNase-seq  ENCFF593ZPC DNase-seq    Data format 
     ENCFF599PPO_H3K27me3  ENCFF599PPO H3K27me3    Data format 
     ENCFF609LFA_microRNA-seq  ENCFF609LFA microRNA-seq    Data format 
     ENCFF614MKK_H3K4me1  ENCFF614MKK H3K4me1    Data format 
     ENCFF622PZI_DNase-seq  ENCFF622PZI DNase-seq    Data format 
     ENCFF628RWE_H3K27me3  ENCFF628RWE H3K27me3    Data format 
     ENCFF629NQR_H3K4me3  ENCFF629NQR H3K4me3    Data format 
     ENCFF630CAU_H3K4me3  ENCFF630CAU H3K4me3    Data format 
     ENCFF637FNU_H3K27me3  ENCFF637FNU H3K27me3    Data format 
     ENCFF643ARA_DNase-seq  ENCFF643ARA DNase-seq    Data format 
     ENCFF647IXQ_H3K9me3  ENCFF647IXQ H3K9me3    Data format 
     ENCFF655RND_H3K9me3  ENCFF655RND H3K9me3    Data format 
     ENCFF657KLL_DNase-seq  ENCFF657KLL DNase-seq    Data format 
     ENCFF662FTP_H3K9me3  ENCFF662FTP H3K9me3    Data format 
     ENCFF689USU_H3K36me3  ENCFF689USU H3K36me3    Data format 
     ENCFF689WSC_H3K4me3  ENCFF689WSC H3K4me3    Data format 
     ENCFF703BCO_DNase-seq  ENCFF703BCO DNase-seq    Data format 
     ENCFF707FCC_H3K9me3  ENCFF707FCC H3K9me3    Data format 
     ENCFF707LWR_H3K4me3  ENCFF707LWR H3K4me3    Data format 
     ENCFF735MKP_DNase-seq  ENCFF735MKP DNase-seq    Data format 
     ENCFF740LUH_H3K27me3  ENCFF740LUH H3K27me3    Data format 
     ENCFF747IRP_H3K9me3  ENCFF747IRP H3K9me3    Data format 
     ENCFF771OCT_H3K36me3  ENCFF771OCT H3K36me3    Data format 
     ENCFF772NSW_H3K27me3  ENCFF772NSW H3K27me3    Data format 
     ENCFF790BIY_H3K4me1  ENCFF790BIY H3K4me1    Data format 
     ENCFF797RXG_H3K36me3  ENCFF797RXG H3K36me3    Data format 
     ENCFF823OFU_H3K4me1  ENCFF823OFU H3K4me1    Data format 
     ENCFF825WFD_H3K4me1  ENCFF825WFD H3K4me1    Data format 
     ENCFF828DSX_DNase-seq  ENCFF828DSX DNase-seq    Data format 
     ENCFF841EYO_H3K36me3  ENCFF841EYO H3K36me3    Data format 
     ENCFF852OBA_DNase-seq  ENCFF852OBA DNase-seq    Data format 
     ENCFF868FCN_H3K27me3  ENCFF868FCN H3K27me3    Data format 
     ENCFF872VOX_H3K9me3  ENCFF872VOX H3K9me3    Data format 
     ENCFF879IVZ_H3K9me3  ENCFF879IVZ H3K9me3    Data format 
     ENCFF884KHZ_H3K4me3  ENCFF884KHZ H3K4me3    Data format 
     ENCFF898ENP_H3K27me3  ENCFF898ENP H3K27me3    Data format 
     ENCFF908KQH_H3K27me3  ENCFF908KQH H3K27me3    Data format 
     ENCFF922LJN_H3K9me3  ENCFF922LJN H3K9me3    Data format 
     ENCFF938PFQ_H3K9me3  ENCFF938PFQ H3K9me3    Data format 
     ENCFF942CMQ_H3K4me3  ENCFF942CMQ H3K4me3    Data format 
     ENCFF956HEV_H3K4me1  ENCFF956HEV H3K4me1    Data format 
     ENCFF970KUJ_H3K36me3  ENCFF970KUJ H3K36me3    Data format 
     ENCFF983NJN_H3K36me3  ENCFF983NJN H3K36me3    Data format 
     ENCFF985OQZ_H3K9me3  ENCFF985OQZ H3K9me3    Data format 
     ENCFF988QYQ_H3K36me3  ENCFF988QYQ H3K36me3    Data format 
     ENCFF997IXW_H3K4me3  ENCFF997IXW H3K4me3    Data format 
     ENCFF999KAP_H3K4me3  ENCFF999KAP H3K4me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:CpG_sites_coverage
Sample:B_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF