Sample Summary caudate_nucleus Summary Track Settings
 
Roadmap Epigenome caudate_nucleus Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF006FDD_H3K27me3  ENCFF006FDD H3K27me3    Data format 
     ENCFF013OYT_H3K27ac  ENCFF013OYT H3K27ac    Data format 
     ENCFF037JDO_H3K36me3  ENCFF037JDO H3K36me3    Data format 
     ENCFF043ZYE_H3K27ac  ENCFF043ZYE H3K27ac    Data format 
     ENCFF065APW_H3K36me3  ENCFF065APW H3K36me3    Data format 
     ENCFF069PRS_H3K4me1  ENCFF069PRS H3K4me1    Data format 
     ENCFF074QWH_H3K27me3  ENCFF074QWH H3K27me3    Data format 
     ENCFF133EEG_H3K4me1  ENCFF133EEG H3K4me1    Data format 
     ENCFF153BNC_H3K27ac  ENCFF153BNC H3K27ac    Data format 
     ENCFF158MOD_H3K9me3  ENCFF158MOD H3K9me3    Data format 
     ENCFF162GEQ_H3K27me3  ENCFF162GEQ H3K27me3    Data format 
     ENCFF166DOF_H3K9me3  ENCFF166DOF H3K9me3    Data format 
     ENCFF201DBS_H3K36me3  ENCFF201DBS H3K36me3    Data format 
     ENCFF245VXE_H3K4me1  ENCFF245VXE H3K4me1    Data format 
     ENCFF273JQE_H3K27ac  ENCFF273JQE H3K27ac    Data format 
     ENCFF285IPK_H3K9me3  ENCFF285IPK H3K9me3    Data format 
     ENCFF290SQY_H3K9ac  ENCFF290SQY H3K9ac    Data format 
     ENCFF294RCE_H3K4me3  ENCFF294RCE H3K4me3    Data format 
     ENCFF319SFO_H3K4me3  ENCFF319SFO H3K4me3    Data format 
     ENCFF337DTR_H3K4me3  ENCFF337DTR H3K4me3    Data format 
     ENCFF359DFH_H3K4me1  ENCFF359DFH H3K4me1    Data format 
     ENCFF405NQM_H3K9me3  ENCFF405NQM H3K9me3    Data format 
     ENCFF418KFN_H3K9me3  ENCFF418KFN H3K9me3    Data format 
     ENCFF481SWU_H3K4me1  ENCFF481SWU H3K4me1    Data format 
     ENCFF506IHN_H3K4me3  ENCFF506IHN H3K4me3    Data format 
     ENCFF511FQU_H3K9me3  ENCFF511FQU H3K9me3    Data format 
     ENCFF548TVE_H3K4me1  ENCFF548TVE H3K4me1    Data format 
     ENCFF569XZD_H3K27me3  ENCFF569XZD H3K27me3    Data format 
     ENCFF626TMX_H3K36me3  ENCFF626TMX H3K36me3    Data format 
     ENCFF662RIO_H3K36me3  ENCFF662RIO H3K36me3    Data format 
     ENCFF694OEQ_H3K4me1  ENCFF694OEQ H3K4me1    Data format 
     ENCFF706JNL_H3K9ac  ENCFF706JNL H3K9ac    Data format 
     ENCFF707ALK_H3K4me1  ENCFF707ALK H3K4me1    Data format 
     ENCFF710EXS_H3K4me3  ENCFF710EXS H3K4me3    Data format 
     ENCFF733OPS_H3K4me3  ENCFF733OPS H3K4me3    Data format 
     ENCFF761KND_H3K36me3  ENCFF761KND H3K36me3    Data format 
     ENCFF791DQY_H3K4me3  ENCFF791DQY H3K4me3    Data format 
     ENCFF793YZF_H3K36me3  ENCFF793YZF H3K36me3    Data format 
     ENCFF794KRV_H3K27ac  ENCFF794KRV H3K27ac    Data format 
     ENCFF794NZG_H3K36me3  ENCFF794NZG H3K36me3    Data format 
     ENCFF796TKW_H3K27me3  ENCFF796TKW H3K27me3    Data format 
     ENCFF806MRU_H3K27ac  ENCFF806MRU H3K27ac    Data format 
     ENCFF874CED_H3K27me3  ENCFF874CED H3K27me3    Data format 
     ENCFF897JYH_H3K9me3  ENCFF897JYH H3K9me3    Data format 
     ENCFF934TJQ_H3K27me3  ENCFF934TJQ H3K27me3    Data format 
     ENCFF955KYZ_H3K9me3  ENCFF955KYZ H3K9me3    Data format 
     ENCFF956HNW_H3K9ac  ENCFF956HNW H3K9ac    Data format 
     ENCFF961LCE_H3K27ac  ENCFF961LCE H3K27ac    Data format 
     ENCFF966LNR_H3K4me3  ENCFF966LNR H3K4me3    Data format 
     ENCFF975VCA_H3K27me3  ENCFF975VCA H3K27me3    Data format 
     ENCFF982BRX_H3K9ac  ENCFF982BRX H3K9ac    Data format 
    
Metadata:
Assay:microRNA-seq
OutputType:plus_strand_signal_of_all_reads
Sample:brain
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF