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Roadmap Epigenome cerebellum Summary

Track collection: Sample Summary

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     ENCFF113ZQY_polyA_plus_RNA-seq  ENCFF113ZQY polyA_plus_RNA-seq    Data format 
     ENCFF249KID_polyA_plus_RNA-seq  ENCFF249KID polyA_plus_RNA-seq    Data format 
     ENCFF348TJB_H3K4me3  ENCFF348TJB H3K4me3    Data format 
     ENCFF372VUI_H3K4me3  ENCFF372VUI H3K4me3    Data format 
     ENCFF396RJU_microRNA-seq  ENCFF396RJU microRNA-seq    Data format 
     ENCFF504XAW_H3K4me3  ENCFF504XAW H3K4me3    Data format 
     ENCFF597ZGD_H3K4me3  ENCFF597ZGD H3K4me3    Data format 
     ENCFF714GLW_polyA_plus_RNA-seq  ENCFF714GLW polyA_plus_RNA-seq    Data format 
     ENCFF889CHW_microRNA-seq  ENCFF889CHW microRNA-seq    Data format 
     ENCFF910ZBF_microRNA-seq  ENCFF910ZBF microRNA-seq    Data format 
     ENCFF954DRP_microRNA-seq  ENCFF954DRP microRNA-seq    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:signal_of_all_reads
Sample:CD8-positive,_alpha-beta_T_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF