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Roadmap Epigenome chorion Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF003NRZ_H3K27me3  ENCFF003NRZ H3K27me3    Data format 
     ENCFF011CXN_polyA_plus_RNA-seq  ENCFF011CXN polyA_plus_RNA-seq    Data format 
     ENCFF015PTE_H3K27ac  ENCFF015PTE H3K27ac    Data format 
     ENCFF021EAX_microRNA-seq  ENCFF021EAX microRNA-seq    Data format 
     ENCFF022MMG_microRNA-seq  ENCFF022MMG microRNA-seq    Data format 
     ENCFF071OXC_H3K36me3  ENCFF071OXC H3K36me3    Data format 
     ENCFF080CYW_H3K4me1  ENCFF080CYW H3K4me1    Data format 
     ENCFF087VRA_polyA_plus_RNA-seq  ENCFF087VRA polyA_plus_RNA-seq    Data format 
     ENCFF123OGY_H3K4me3  ENCFF123OGY H3K4me3    Data format 
     ENCFF138DXF_polyA_plus_RNA-seq  ENCFF138DXF polyA_plus_RNA-seq    Data format 
     ENCFF146SPH_H3K27me3  ENCFF146SPH H3K27me3    Data format 
     ENCFF153ALM_H3K27ac  ENCFF153ALM H3K27ac    Data format 
     ENCFF183LBD_H3K36me3  ENCFF183LBD H3K36me3    Data format 
     ENCFF226WOL_H3K4me1  ENCFF226WOL H3K4me1    Data format 
     ENCFF241MGY_polyA_plus_RNA-seq  ENCFF241MGY polyA_plus_RNA-seq    Data format 
     ENCFF254HBQ_polyA_plus_RNA-seq  ENCFF254HBQ polyA_plus_RNA-seq    Data format 
     ENCFF256JEM_polyA_plus_RNA-seq  ENCFF256JEM polyA_plus_RNA-seq    Data format 
     ENCFF278MAV_microRNA-seq  ENCFF278MAV microRNA-seq    Data format 
     ENCFF308DJA_microRNA-seq  ENCFF308DJA microRNA-seq    Data format 
     ENCFF318ITQ_H3K36me3  ENCFF318ITQ H3K36me3    Data format 
     ENCFF326QCS_H3K4me1  ENCFF326QCS H3K4me1    Data format 
     ENCFF362MJJ_polyA_plus_RNA-seq  ENCFF362MJJ polyA_plus_RNA-seq    Data format 
     ENCFF365WAY_polyA_plus_RNA-seq  ENCFF365WAY polyA_plus_RNA-seq    Data format 
     ENCFF374LYX_H3K27me3  ENCFF374LYX H3K27me3    Data format 
     ENCFF377BKD_polyA_plus_RNA-seq  ENCFF377BKD polyA_plus_RNA-seq    Data format 
     ENCFF379RYN_H3K4me3  ENCFF379RYN H3K4me3    Data format 
     ENCFF385RYQ_H3K4me3  ENCFF385RYQ H3K4me3    Data format 
     ENCFF389FXB_H3K4me3  ENCFF389FXB H3K4me3    Data format 
     ENCFF412MAO_H3K4me1  ENCFF412MAO H3K4me1    Data format 
     ENCFF440HLL_polyA_plus_RNA-seq  ENCFF440HLL polyA_plus_RNA-seq    Data format 
     ENCFF444KPK_microRNA-seq  ENCFF444KPK microRNA-seq    Data format 
     ENCFF462NKZ_H3K4me3  ENCFF462NKZ H3K4me3    Data format 
     ENCFF464ANV_microRNA-seq  ENCFF464ANV microRNA-seq    Data format 
     ENCFF478LGG_microRNA-seq  ENCFF478LGG microRNA-seq    Data format 
     ENCFF483NVH_H3K4me3  ENCFF483NVH H3K4me3    Data format 
     ENCFF535NXB_microRNA-seq  ENCFF535NXB microRNA-seq    Data format 
     ENCFF546FJS_H3K4me1  ENCFF546FJS H3K4me1    Data format 
     ENCFF553ZVL_H3K27me3  ENCFF553ZVL H3K27me3    Data format 
     ENCFF575AUJ_polyA_plus_RNA-seq  ENCFF575AUJ polyA_plus_RNA-seq    Data format 
     ENCFF603LWN_H3K27ac  ENCFF603LWN H3K27ac    Data format 
     ENCFF606FDL_microRNA-seq  ENCFF606FDL microRNA-seq    Data format 
     ENCFF614UJG_H3K36me3  ENCFF614UJG H3K36me3    Data format 
     ENCFF636OHW_polyA_plus_RNA-seq  ENCFF636OHW polyA_plus_RNA-seq    Data format 
     ENCFF647MKA_H3K36me3  ENCFF647MKA H3K36me3    Data format 
     ENCFF669BPW_microRNA-seq  ENCFF669BPW microRNA-seq    Data format 
     ENCFF677HVE_polyA_plus_RNA-seq  ENCFF677HVE polyA_plus_RNA-seq    Data format 
     ENCFF677LEE_microRNA-seq  ENCFF677LEE microRNA-seq    Data format 
     ENCFF700FLG_polyA_plus_RNA-seq  ENCFF700FLG polyA_plus_RNA-seq    Data format 
     ENCFF700IAG_polyA_plus_RNA-seq  ENCFF700IAG polyA_plus_RNA-seq    Data format 
     ENCFF700QAE_microRNA-seq  ENCFF700QAE microRNA-seq    Data format 
     ENCFF730QDX_H3K4me3  ENCFF730QDX H3K4me3    Data format 
     ENCFF740CCS_H3K27ac  ENCFF740CCS H3K27ac    Data format 
     ENCFF762LXS_H3K4me1  ENCFF762LXS H3K4me1    Data format 
     ENCFF770BWK_microRNA-seq  ENCFF770BWK microRNA-seq    Data format 
     ENCFF779ZOU_microRNA-seq  ENCFF779ZOU microRNA-seq    Data format 
     ENCFF788JCR_H3K36me3  ENCFF788JCR H3K36me3    Data format 
     ENCFF788UUK_H3K27me3  ENCFF788UUK H3K27me3    Data format 
     ENCFF797TYB_H3K4me1  ENCFF797TYB H3K4me1    Data format 
     ENCFF823EHX_microRNA-seq  ENCFF823EHX microRNA-seq    Data format 
     ENCFF851AEJ_H3K4me1  ENCFF851AEJ H3K4me1    Data format 
     ENCFF860HQU_H3K36me3  ENCFF860HQU H3K36me3    Data format 
     ENCFF876IKQ_H3K27ac  ENCFF876IKQ H3K27ac    Data format 
     ENCFF883YLZ_H3K27ac  ENCFF883YLZ H3K27ac    Data format 
     ENCFF896KEC_H3K27ac  ENCFF896KEC H3K27ac    Data format 
     ENCFF933EFO_H3K27me3  ENCFF933EFO H3K27me3    Data format 
     ENCFF942GZB_H3K27ac  ENCFF942GZB H3K27ac    Data format 
     ENCFF949GLX_H3K27me3  ENCFF949GLX H3K27me3    Data format 
     ENCFF976KIV_H3K4me3  ENCFF976KIV H3K4me3    Data format 
     ENCFF988OAJ_H3K27me3  ENCFF988OAJ H3K27me3    Data format 
     ENCFF993DMA_microRNA-seq  ENCFF993DMA microRNA-seq    Data format 
     ENCFF999VOY_H3K36me3  ENCFF999VOY H3K36me3    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:plus_strand_signal_of_all_reads
Sample:cerebellum
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF