Sample Summary chorionic_villus Summary Track Settings
 
Roadmap Epigenome chorionic_villus Summary

Track collection: Sample Summary

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     ENCFF010KZC_H3K27me3  ENCFF010KZC H3K27me3    Data format 
     ENCFF012NGS_H3K36me3  ENCFF012NGS H3K36me3    Data format 
     ENCFF012YGQ_H3K4me1  ENCFF012YGQ H3K4me1    Data format 
     ENCFF014THP_polyA_plus_RNA-seq  ENCFF014THP polyA_plus_RNA-seq    Data format 
     ENCFF015MOG_H3K4me3  ENCFF015MOG H3K4me3    Data format 
     ENCFF020YCR_H3K4me3  ENCFF020YCR H3K4me3    Data format 
     ENCFF034HDO_polyA_plus_RNA-seq  ENCFF034HDO polyA_plus_RNA-seq    Data format 
     ENCFF066CLF_H3K36me3  ENCFF066CLF H3K36me3    Data format 
     ENCFF067OGD_H3K27me3  ENCFF067OGD H3K27me3    Data format 
     ENCFF087PEW_H3K27me3  ENCFF087PEW H3K27me3    Data format 
     ENCFF119POQ_H3K4me3  ENCFF119POQ H3K4me3    Data format 
     ENCFF122PSF_H3K4me3  ENCFF122PSF H3K4me3    Data format 
     ENCFF124JKK_microRNA-seq  ENCFF124JKK microRNA-seq    Data format 
     ENCFF124UOG_H3K27me3  ENCFF124UOG H3K27me3    Data format 
     ENCFF135KCY_microRNA-seq  ENCFF135KCY microRNA-seq    Data format 
     ENCFF144CTC_polyA_plus_RNA-seq  ENCFF144CTC polyA_plus_RNA-seq    Data format 
     ENCFF157TZQ_polyA_plus_RNA-seq  ENCFF157TZQ polyA_plus_RNA-seq    Data format 
     ENCFF169MHR_H3K4me3  ENCFF169MHR H3K4me3    Data format 
     ENCFF173MHO_microRNA-seq  ENCFF173MHO microRNA-seq    Data format 
     ENCFF177VRD_microRNA-seq  ENCFF177VRD microRNA-seq    Data format 
     ENCFF190JZA_H3K36me3  ENCFF190JZA H3K36me3    Data format 
     ENCFF191CMO_H3K27ac  ENCFF191CMO H3K27ac    Data format 
     ENCFF196AMW_H3K27me3  ENCFF196AMW H3K27me3    Data format 
     ENCFF224SOT_H3K27me3  ENCFF224SOT H3K27me3    Data format 
     ENCFF236CYN_polyA_plus_RNA-seq  ENCFF236CYN polyA_plus_RNA-seq    Data format 
     ENCFF245MGD_H3K4me1  ENCFF245MGD H3K4me1    Data format 
     ENCFF248UXW_microRNA-seq  ENCFF248UXW microRNA-seq    Data format 
     ENCFF259MAY_H3K36me3  ENCFF259MAY H3K36me3    Data format 
     ENCFF260IRO_microRNA-seq  ENCFF260IRO microRNA-seq    Data format 
     ENCFF266YLQ_H3K27ac  ENCFF266YLQ H3K27ac    Data format 
     ENCFF275VUJ_polyA_plus_RNA-seq  ENCFF275VUJ polyA_plus_RNA-seq    Data format 
     ENCFF277WNH_H3K9me3  ENCFF277WNH H3K9me3    Data format 
     ENCFF279SBT_H3K4me1  ENCFF279SBT H3K4me1    Data format 
     ENCFF284EHD_H3K27me3  ENCFF284EHD H3K27me3    Data format 
     ENCFF287BWZ_H3K27me3  ENCFF287BWZ H3K27me3    Data format 
     ENCFF290SZW_H3K9me3  ENCFF290SZW H3K9me3    Data format 
     ENCFF300TSM_polyA_plus_RNA-seq  ENCFF300TSM polyA_plus_RNA-seq    Data format 
     ENCFF302ALR_H3K27ac  ENCFF302ALR H3K27ac    Data format 
     ENCFF328YCC_H3K27me3  ENCFF328YCC H3K27me3    Data format 
     ENCFF331OKQ_H3K36me3  ENCFF331OKQ H3K36me3    Data format 
     ENCFF337CGA_H3K4me3  ENCFF337CGA H3K4me3    Data format 
     ENCFF345YRZ_H3K9me3  ENCFF345YRZ H3K9me3    Data format 
     ENCFF351OVU_H3K9me3  ENCFF351OVU H3K9me3    Data format 
     ENCFF358IRQ_H3K36me3  ENCFF358IRQ H3K36me3    Data format 
     ENCFF372CGE_H3K4me1  ENCFF372CGE H3K4me1    Data format 
     ENCFF385OED_H3K36me3  ENCFF385OED H3K36me3    Data format 
     ENCFF386NKJ_H3K36me3  ENCFF386NKJ H3K36me3    Data format 
     ENCFF387IIB_H3K4me1  ENCFF387IIB H3K4me1    Data format 
     ENCFF387LUJ_H3K27ac  ENCFF387LUJ H3K27ac    Data format 
     ENCFF389BUT_H3K4me3  ENCFF389BUT H3K4me3    Data format 
     ENCFF390BAT_H3K27me3  ENCFF390BAT H3K27me3    Data format 
     ENCFF396GAM_H3K36me3  ENCFF396GAM H3K36me3    Data format 
     ENCFF399PSF_microRNA-seq  ENCFF399PSF microRNA-seq    Data format 
     ENCFF409PTA_H3K9me3  ENCFF409PTA H3K9me3    Data format 
     ENCFF418VUK_polyA_plus_RNA-seq  ENCFF418VUK polyA_plus_RNA-seq    Data format 
     ENCFF434SXS_H3K27me3  ENCFF434SXS H3K27me3    Data format 
     ENCFF451OTN_H3K27ac  ENCFF451OTN H3K27ac    Data format 
     ENCFF453MOB_microRNA-seq  ENCFF453MOB microRNA-seq    Data format 
     ENCFF462HVU_H3K4me3  ENCFF462HVU H3K4me3    Data format 
     ENCFF468JQV_H3K4me3  ENCFF468JQV H3K4me3    Data format 
     ENCFF474VRL_H3K4me3  ENCFF474VRL H3K4me3    Data format 
     ENCFF497DMG_H3K27ac  ENCFF497DMG H3K27ac    Data format 
     ENCFF497TFP_H3K9me3  ENCFF497TFP H3K9me3    Data format 
     ENCFF499XSU_microRNA-seq  ENCFF499XSU microRNA-seq    Data format 
     ENCFF502XMH_polyA_plus_RNA-seq  ENCFF502XMH polyA_plus_RNA-seq    Data format 
     ENCFF510JVO_H3K4me1  ENCFF510JVO H3K4me1    Data format 
     ENCFF514SQD_H3K4me1  ENCFF514SQD H3K4me1    Data format 
     ENCFF518GSE_H3K36me3  ENCFF518GSE H3K36me3    Data format 
     ENCFF520FUJ_polyA_plus_RNA-seq  ENCFF520FUJ polyA_plus_RNA-seq    Data format 
     ENCFF526SYV_H3K9me3  ENCFF526SYV H3K9me3    Data format 
     ENCFF541CWH_H3K9me3  ENCFF541CWH H3K9me3    Data format 
     ENCFF546VLM_microRNA-seq  ENCFF546VLM microRNA-seq    Data format 
     ENCFF548VTO_H3K4me3  ENCFF548VTO H3K4me3    Data format 
     ENCFF550YNT_H3K27ac  ENCFF550YNT H3K27ac    Data format 
     ENCFF558YBS_H3K36me3  ENCFF558YBS H3K36me3    Data format 
     ENCFF559IBZ_H3K4me1  ENCFF559IBZ H3K4me1    Data format 
     ENCFF560DWQ_H3K27me3  ENCFF560DWQ H3K27me3    Data format 
     ENCFF565CZE_microRNA-seq  ENCFF565CZE microRNA-seq    Data format 
     ENCFF570KKW_H3K9me3  ENCFF570KKW H3K9me3    Data format 
     ENCFF577LIX_H3K36me3  ENCFF577LIX H3K36me3    Data format 
     ENCFF601VYX_H3K4me3  ENCFF601VYX H3K4me3    Data format 
     ENCFF617MCD_H3K27ac  ENCFF617MCD H3K27ac    Data format 
     ENCFF629AKZ_H3K4me1  ENCFF629AKZ H3K4me1    Data format 
     ENCFF635XBE_H3K4me1  ENCFF635XBE H3K4me1    Data format 
     ENCFF643OVE_H3K4me3  ENCFF643OVE H3K4me3    Data format 
     ENCFF644IIF_H3K36me3  ENCFF644IIF H3K36me3    Data format 
     ENCFF644WJA_microRNA-seq  ENCFF644WJA microRNA-seq    Data format 
     ENCFF654HDQ_H3K36me3  ENCFF654HDQ H3K36me3    Data format 
     ENCFF661RIB_H3K27ac  ENCFF661RIB H3K27ac    Data format 
     ENCFF663RUW_polyA_plus_RNA-seq  ENCFF663RUW polyA_plus_RNA-seq    Data format 
     ENCFF681AIM_H3K4me3  ENCFF681AIM H3K4me3    Data format 
     ENCFF689EMV_H3K9me3  ENCFF689EMV H3K9me3    Data format 
     ENCFF699NCZ_H3K27me3  ENCFF699NCZ H3K27me3    Data format 
     ENCFF710ASO_H3K4me1  ENCFF710ASO H3K4me1    Data format 
     ENCFF711KJW_polyA_plus_RNA-seq  ENCFF711KJW polyA_plus_RNA-seq    Data format 
     ENCFF712OZC_H3K9me3  ENCFF712OZC H3K9me3    Data format 
     ENCFF715DNL_H3K27ac  ENCFF715DNL H3K27ac    Data format 
     ENCFF728APV_H3K27me3  ENCFF728APV H3K27me3    Data format 
     ENCFF735ZRC_microRNA-seq  ENCFF735ZRC microRNA-seq    Data format 
     ENCFF741VPQ_H3K27me3  ENCFF741VPQ H3K27me3    Data format 
     ENCFF741YMU_H3K9me3  ENCFF741YMU H3K9me3    Data format 
     ENCFF743ZPK_microRNA-seq  ENCFF743ZPK microRNA-seq    Data format 
     ENCFF760XPA_H3K27ac  ENCFF760XPA H3K27ac    Data format 
     ENCFF794BTN_H3K27ac  ENCFF794BTN H3K27ac    Data format 
     ENCFF795VRR_H3K4me1  ENCFF795VRR H3K4me1    Data format 
     ENCFF802VGK_H3K36me3  ENCFF802VGK H3K36me3    Data format 
     ENCFF821FQB_microRNA-seq  ENCFF821FQB microRNA-seq    Data format 
     ENCFF834HSP_H3K9me3  ENCFF834HSP H3K9me3    Data format 
     ENCFF840RKG_H3K27me3  ENCFF840RKG H3K27me3    Data format 
     ENCFF843KOD_polyA_plus_RNA-seq  ENCFF843KOD polyA_plus_RNA-seq    Data format 
     ENCFF853XLN_H3K9me3  ENCFF853XLN H3K9me3    Data format 
     ENCFF869ICH_H3K9me3  ENCFF869ICH H3K9me3    Data format 
     ENCFF873VQK_H3K27ac  ENCFF873VQK H3K27ac    Data format 
     ENCFF874RNA_H3K4me1  ENCFF874RNA H3K4me1    Data format 
     ENCFF877OBS_polyA_plus_RNA-seq  ENCFF877OBS polyA_plus_RNA-seq    Data format 
     ENCFF883TLY_H3K4me1  ENCFF883TLY H3K4me1    Data format 
     ENCFF884SVO_H3K27ac  ENCFF884SVO H3K27ac    Data format 
     ENCFF888FPP_H3K4me1  ENCFF888FPP H3K4me1    Data format 
     ENCFF899GWP_H3K4me3  ENCFF899GWP H3K4me3    Data format 
     ENCFF903BKT_H3K36me3  ENCFF903BKT H3K36me3    Data format 
     ENCFF911IYQ_H3K27ac  ENCFF911IYQ H3K27ac    Data format 
     ENCFF946DTV_H3K9me3  ENCFF946DTV H3K9me3    Data format 
     ENCFF958PEF_polyA_plus_RNA-seq  ENCFF958PEF polyA_plus_RNA-seq    Data format 
     ENCFF966LQS_microRNA-seq  ENCFF966LQS microRNA-seq    Data format 
     ENCFF970ISL_H3K27ac  ENCFF970ISL H3K27ac    Data format 
     ENCFF974COX_H3K4me3  ENCFF974COX H3K4me3    Data format 
     ENCFF984LLE_H3K4me1  ENCFF984LLE H3K4me1    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:minus_strand_signal_of_unique_reads
Sample:chorion
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF