Sample Summary cingulate_gyrus Summary Track Settings
 
Roadmap Epigenome cingulate_gyrus Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF020ZHY_H3K27ac  ENCFF020ZHY H3K27ac    Data format 
     ENCFF065CFJ_H3K4me3  ENCFF065CFJ H3K4me3    Data format 
     ENCFF072RDG_H3K36me3  ENCFF072RDG H3K36me3    Data format 
     ENCFF076IIF_H3K9me3  ENCFF076IIF H3K9me3    Data format 
     ENCFF081IVF_H3K36me3  ENCFF081IVF H3K36me3    Data format 
     ENCFF089YQZ_H3K9ac  ENCFF089YQZ H3K9ac    Data format 
     ENCFF094QHD_H3K27me3  ENCFF094QHD H3K27me3    Data format 
     ENCFF103YRF_H3K27me3  ENCFF103YRF H3K27me3    Data format 
     ENCFF141YFL_H3K36me3  ENCFF141YFL H3K36me3    Data format 
     ENCFF169PYV_H3K27ac  ENCFF169PYV H3K27ac    Data format 
     ENCFF223IHB_H3K9me3  ENCFF223IHB H3K9me3    Data format 
     ENCFF227KJH_H3K27ac  ENCFF227KJH H3K27ac    Data format 
     ENCFF236USC_H3K9me3  ENCFF236USC H3K9me3    Data format 
     ENCFF251EUG_H3K4me1  ENCFF251EUG H3K4me1    Data format 
     ENCFF282SRM_H3K4me3  ENCFF282SRM H3K4me3    Data format 
     ENCFF291BYX_H3K9me3  ENCFF291BYX H3K9me3    Data format 
     ENCFF292NFU_H3K4me1  ENCFF292NFU H3K4me1    Data format 
     ENCFF317ZAO_H3K9ac  ENCFF317ZAO H3K9ac    Data format 
     ENCFF323HEP_H3K27me3  ENCFF323HEP H3K27me3    Data format 
     ENCFF377MKH_H3K27ac  ENCFF377MKH H3K27ac    Data format 
     ENCFF414APF_H3K4me3  ENCFF414APF H3K4me3    Data format 
     ENCFF414FEQ_H3K4me1  ENCFF414FEQ H3K4me1    Data format 
     ENCFF426IAV_H3K36me3  ENCFF426IAV H3K36me3    Data format 
     ENCFF438QTX_H3K4me3  ENCFF438QTX H3K4me3    Data format 
     ENCFF452WSH_H3K4me3  ENCFF452WSH H3K4me3    Data format 
     ENCFF456KFU_H3K27ac  ENCFF456KFU H3K27ac    Data format 
     ENCFF507RVO_H3K4me3  ENCFF507RVO H3K4me3    Data format 
     ENCFF595ALE_H3K27ac  ENCFF595ALE H3K27ac    Data format 
     ENCFF607FXW_H3K4me1  ENCFF607FXW H3K4me1    Data format 
     ENCFF608HUB_H3K9me3  ENCFF608HUB H3K9me3    Data format 
     ENCFF621RES_H3K9me3  ENCFF621RES H3K9me3    Data format 
     ENCFF625JLJ_H3K4me3  ENCFF625JLJ H3K4me3    Data format 
     ENCFF653QVF_H3K36me3  ENCFF653QVF H3K36me3    Data format 
     ENCFF655AQX_H3K9me3  ENCFF655AQX H3K9me3    Data format 
     ENCFF671FBK_H3K4me3  ENCFF671FBK H3K4me3    Data format 
     ENCFF692LNN_H3K27ac  ENCFF692LNN H3K27ac    Data format 
     ENCFF706QDU_H3K27ac  ENCFF706QDU H3K27ac    Data format 
     ENCFF723FJT_H3K36me3  ENCFF723FJT H3K36me3    Data format 
     ENCFF761ZKV_H3K4me1  ENCFF761ZKV H3K4me1    Data format 
     ENCFF780EJQ_H3K36me3  ENCFF780EJQ H3K36me3    Data format 
     ENCFF838PEA_H3K36me3  ENCFF838PEA H3K36me3    Data format 
     ENCFF852FGF_H3K9me3  ENCFF852FGF H3K9me3    Data format 
     ENCFF858FMK_H3K27me3  ENCFF858FMK H3K27me3    Data format 
     ENCFF866WNB_H3K4me1  ENCFF866WNB H3K4me1    Data format 
     ENCFF885FVT_H3K4me1  ENCFF885FVT H3K4me1    Data format 
     ENCFF955ZQN_H3K9ac  ENCFF955ZQN H3K9ac    Data format 
     ENCFF967ZSH_H3K9ac  ENCFF967ZSH H3K9ac    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:minus_strand_signal_of_all_reads
Sample:chorionic_villus
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF