Sample Summary colonic_mucosa Summary Track Settings
 
Roadmap Epigenome colonic_mucosa Summary

Track collection: Sample Summary

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     ENCFF004TYK_H3K36me3  ENCFF004TYK H3K36me3    Data format 
     ENCFF051FST_H3K4me3  ENCFF051FST H3K4me3    Data format 
     ENCFF051JTV_H3K4me3  ENCFF051JTV H3K4me3    Data format 
     ENCFF063ARQ_H3K36me3  ENCFF063ARQ H3K36me3    Data format 
     ENCFF076NFC_H3K27me3  ENCFF076NFC H3K27me3    Data format 
     ENCFF087QEY_H3K36me3  ENCFF087QEY H3K36me3    Data format 
     ENCFF132FOR_H3K9ac  ENCFF132FOR H3K9ac    Data format 
     ENCFF133FOG_H3K27ac  ENCFF133FOG H3K27ac    Data format 
     ENCFF162QDX_H3K36me3  ENCFF162QDX H3K36me3    Data format 
     ENCFF164DXJ_H3K9ac  ENCFF164DXJ H3K9ac    Data format 
     ENCFF181JAH_H3K4me1  ENCFF181JAH H3K4me1    Data format 
     ENCFF190OLZ_H3K4me3  ENCFF190OLZ H3K4me3    Data format 
     ENCFF194YJD_H3K4me1  ENCFF194YJD H3K4me1    Data format 
     ENCFF220ZKF_H3K27ac  ENCFF220ZKF H3K27ac    Data format 
     ENCFF221ODV_H3K4me1  ENCFF221ODV H3K4me1    Data format 
     ENCFF256GHU_H3K4me1  ENCFF256GHU H3K4me1    Data format 
     ENCFF260ELZ_H3K4me1  ENCFF260ELZ H3K4me1    Data format 
     ENCFF266EAY_H3K4me1  ENCFF266EAY H3K4me1    Data format 
     ENCFF279GIO_H3K36me3  ENCFF279GIO H3K36me3    Data format 
     ENCFF311RGP_H3K9me3  ENCFF311RGP H3K9me3    Data format 
     ENCFF331ZPM_H3K36me3  ENCFF331ZPM H3K36me3    Data format 
     ENCFF349BGH_H3K4me3  ENCFF349BGH H3K4me3    Data format 
     ENCFF362AWC_H3K4me1  ENCFF362AWC H3K4me1    Data format 
     ENCFF429LOR_H3K9ac  ENCFF429LOR H3K9ac    Data format 
     ENCFF455KGB_H3K9me3  ENCFF455KGB H3K9me3    Data format 
     ENCFF494ODQ_H3K4me1  ENCFF494ODQ H3K4me1    Data format 
     ENCFF505LDB_H3K27ac  ENCFF505LDB H3K27ac    Data format 
     ENCFF520ORX_H3K27me3  ENCFF520ORX H3K27me3    Data format 
     ENCFF523HVU_H3K9me3  ENCFF523HVU H3K9me3    Data format 
     ENCFF535OFR_H3K27me3  ENCFF535OFR H3K27me3    Data format 
     ENCFF607LGN_H3K4me3  ENCFF607LGN H3K4me3    Data format 
     ENCFF631SZJ_H3K9ac  ENCFF631SZJ H3K9ac    Data format 
     ENCFF638SDV_H3K27me3  ENCFF638SDV H3K27me3    Data format 
     ENCFF638VOA_H3K27ac  ENCFF638VOA H3K27ac    Data format 
     ENCFF650EZM_H3K27ac  ENCFF650EZM H3K27ac    Data format 
     ENCFF665JEQ_H3K9ac  ENCFF665JEQ H3K9ac    Data format 
     ENCFF684CBW_H3K9ac  ENCFF684CBW H3K9ac    Data format 
     ENCFF736QDA_H3K9ac  ENCFF736QDA H3K9ac    Data format 
     ENCFF746LJC_H3K27ac  ENCFF746LJC H3K27ac    Data format 
     ENCFF816RWN_H3K4me3  ENCFF816RWN H3K4me3    Data format 
     ENCFF816ZXG_H3K27me3  ENCFF816ZXG H3K27me3    Data format 
     ENCFF822WXS_H3K9me3  ENCFF822WXS H3K9me3    Data format 
     ENCFF829QZN_H3K27me3  ENCFF829QZN H3K27me3    Data format 
     ENCFF847UWN_H3K36me3  ENCFF847UWN H3K36me3    Data format 
     ENCFF861DEQ_H3K4me3  ENCFF861DEQ H3K4me3    Data format 
     ENCFF865JAH_H3K9ac  ENCFF865JAH H3K9ac    Data format 
     ENCFF871QOG_H3K9me3  ENCFF871QOG H3K9me3    Data format 
     ENCFF877MFN_H3K4me3  ENCFF877MFN H3K4me3    Data format 
     ENCFF904OGD_H3K27me3  ENCFF904OGD H3K27me3    Data format 
     ENCFF922UBS_H3K27ac  ENCFF922UBS H3K27ac    Data format 
     ENCFF924JMN_H3K36me3  ENCFF924JMN H3K36me3    Data format 
     ENCFF932HOT_H3K27ac  ENCFF932HOT H3K27ac    Data format 
     ENCFF941ANA_H3K27me3  ENCFF941ANA H3K27me3    Data format 
     ENCFF942EMM_H3K9me3  ENCFF942EMM H3K9me3    Data format 
     ENCFF953KYX_H3K9me3  ENCFF953KYX H3K9me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:cingulate_gyrus
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF