Sample Summary duodenal_mucosa Summary Track Settings
 
Roadmap Epigenome duodenal_mucosa Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
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     ENCFF009ARK_H3K27me3  ENCFF009ARK H3K27me3    Data format 
     ENCFF034PBB_H3K4me1  ENCFF034PBB H3K4me1    Data format 
     ENCFF037YUR_H3K36me3  ENCFF037YUR H3K36me3    Data format 
     ENCFF061RQB_H3K4me1  ENCFF061RQB H3K4me1    Data format 
     ENCFF085AEJ_H3K36me3  ENCFF085AEJ H3K36me3    Data format 
     ENCFF089QAD_H3K9ac  ENCFF089QAD H3K9ac    Data format 
     ENCFF112FHC_H3K27me3  ENCFF112FHC H3K27me3    Data format 
     ENCFF114BIO_H3K4me1  ENCFF114BIO H3K4me1    Data format 
     ENCFF117OMY_H3K9me3  ENCFF117OMY H3K9me3    Data format 
     ENCFF210HBA_H3K4me1  ENCFF210HBA H3K4me1    Data format 
     ENCFF215WGG_H3K9me3  ENCFF215WGG H3K9me3    Data format 
     ENCFF218PDV_H3K9ac  ENCFF218PDV H3K9ac    Data format 
     ENCFF243BGZ_H3K4me3  ENCFF243BGZ H3K4me3    Data format 
     ENCFF249YUM_H3K36me3  ENCFF249YUM H3K36me3    Data format 
     ENCFF267PQX_H3K4me3  ENCFF267PQX H3K4me3    Data format 
     ENCFF293ISY_H3K27me3  ENCFF293ISY H3K27me3    Data format 
     ENCFF295AJU_H3K9ac  ENCFF295AJU H3K9ac    Data format 
     ENCFF298RHF_H3K36me3  ENCFF298RHF H3K36me3    Data format 
     ENCFF300XQV_H3K27ac  ENCFF300XQV H3K27ac    Data format 
     ENCFF310EWR_H3K9me3  ENCFF310EWR H3K9me3    Data format 
     ENCFF331UHK_H3K4me1  ENCFF331UHK H3K4me1    Data format 
     ENCFF351YKP_H3K9ac  ENCFF351YKP H3K9ac    Data format 
     ENCFF356XLT_H3K4me1  ENCFF356XLT H3K4me1    Data format 
     ENCFF395RJC_H3K4me3  ENCFF395RJC H3K4me3    Data format 
     ENCFF404DAA_H3K9me3  ENCFF404DAA H3K9me3    Data format 
     ENCFF425FMW_H3K4me3  ENCFF425FMW H3K4me3    Data format 
     ENCFF463NRD_H3K27ac  ENCFF463NRD H3K27ac    Data format 
     ENCFF488UTF_H3K9me3  ENCFF488UTF H3K9me3    Data format 
     ENCFF529TFA_H3K27me3  ENCFF529TFA H3K27me3    Data format 
     ENCFF551ZZH_H3K27me3  ENCFF551ZZH H3K27me3    Data format 
     ENCFF570MHX_H3K9me3  ENCFF570MHX H3K9me3    Data format 
     ENCFF574SCO_H3K27me3  ENCFF574SCO H3K27me3    Data format 
     ENCFF577VOZ_H3K4me1  ENCFF577VOZ H3K4me1    Data format 
     ENCFF596MSN_H3K9ac  ENCFF596MSN H3K9ac    Data format 
     ENCFF602MKK_H3K4me1  ENCFF602MKK H3K4me1    Data format 
     ENCFF619USE_H3K27ac  ENCFF619USE H3K27ac    Data format 
     ENCFF622UUO_H3K27me3  ENCFF622UUO H3K27me3    Data format 
     ENCFF628DUD_H3K27ac  ENCFF628DUD H3K27ac    Data format 
     ENCFF658QBC_H3K4me3  ENCFF658QBC H3K4me3    Data format 
     ENCFF688FNP_H3K4me3  ENCFF688FNP H3K4me3    Data format 
     ENCFF688OWS_H3K9me3  ENCFF688OWS H3K9me3    Data format 
     ENCFF759WSX_H3K4me3  ENCFF759WSX H3K4me3    Data format 
     ENCFF798MQU_H3K9me3  ENCFF798MQU H3K9me3    Data format 
     ENCFF830TIW_H3K4me3  ENCFF830TIW H3K4me3    Data format 
     ENCFF872SDP_H3K36me3  ENCFF872SDP H3K36me3    Data format 
     ENCFF901VHY_H3K36me3  ENCFF901VHY H3K36me3    Data format 
     ENCFF918HLY_H3K9ac  ENCFF918HLY H3K9ac    Data format 
     ENCFF922HFW_H3K9ac  ENCFF922HFW H3K9ac    Data format 
     ENCFF943KDJ_H3K27me3  ENCFF943KDJ H3K27me3    Data format 
     ENCFF971JOW_H3K9ac  ENCFF971JOW H3K9ac    Data format 
     ENCFF977RZQ_H3K36me3  ENCFF977RZQ H3K36me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:minus_strand_methylation_state_at_CpG
Sample:common_myeloid_progenitor,_CD34-positive
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF