Sample Summary endocrine_pancreas Summary Track Settings
 
Roadmap Epigenome endocrine_pancreas Summary

Track collection: Sample Summary

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     ENCFF011VNN_H3K4me3  ENCFF011VNN H3K4me3    Data format 
     ENCFF013WVM_polyA_plus_RNA-seq  ENCFF013WVM polyA_plus_RNA-seq    Data format 
     ENCFF016YLR_H3K4me1  ENCFF016YLR H3K4me1    Data format 
     ENCFF024TKA_H3K9me3  ENCFF024TKA H3K9me3    Data format 
     ENCFF028CZM_H3K36me3  ENCFF028CZM H3K36me3    Data format 
     ENCFF037SYV_microRNA-seq  ENCFF037SYV microRNA-seq    Data format 
     ENCFF067PTH_H3K4me1  ENCFF067PTH H3K4me1    Data format 
     ENCFF069QJI_H3K27me3  ENCFF069QJI H3K27me3    Data format 
     ENCFF070LJH_H3K27me3  ENCFF070LJH H3K27me3    Data format 
     ENCFF093NWV_H3K4me3  ENCFF093NWV H3K4me3    Data format 
     ENCFF133KAD_H3K36me3  ENCFF133KAD H3K36me3    Data format 
     ENCFF135GFP_H3K9me3  ENCFF135GFP H3K9me3    Data format 
     ENCFF136MDS_H3K9me3  ENCFF136MDS H3K9me3    Data format 
     ENCFF136PJT_H3K4me3  ENCFF136PJT H3K4me3    Data format 
     ENCFF162WRP_H3K4me1  ENCFF162WRP H3K4me1    Data format 
     ENCFF170FAU_H3K27me3  ENCFF170FAU H3K27me3    Data format 
     ENCFF180JZZ_H3K4me3  ENCFF180JZZ H3K4me3    Data format 
     ENCFF184AJS_H3K27ac  ENCFF184AJS H3K27ac    Data format 
     ENCFF196CZJ_H3K4me1  ENCFF196CZJ H3K4me1    Data format 
     ENCFF212LRT_microRNA-seq  ENCFF212LRT microRNA-seq    Data format 
     ENCFF215WKN_H3K9me3  ENCFF215WKN H3K9me3    Data format 
     ENCFF237BCW_H3K27ac  ENCFF237BCW H3K27ac    Data format 
     ENCFF257UFE_H3K4me1  ENCFF257UFE H3K4me1    Data format 
     ENCFF264ASR_H3K4me3  ENCFF264ASR H3K4me3    Data format 
     ENCFF279WFR_H3K36me3  ENCFF279WFR H3K36me3    Data format 
     ENCFF285MVU_H3K9ac  ENCFF285MVU H3K9ac    Data format 
     ENCFF290HFZ_polyA_plus_RNA-seq  ENCFF290HFZ polyA_plus_RNA-seq    Data format 
     ENCFF309HRY_H3K4me3  ENCFF309HRY H3K4me3    Data format 
     ENCFF314ZFV_H3K27ac  ENCFF314ZFV H3K27ac    Data format 
     ENCFF340VVU_H3K4me3  ENCFF340VVU H3K4me3    Data format 
     ENCFF375UUK_H3K4me3  ENCFF375UUK H3K4me3    Data format 
     ENCFF399ACM_H3K36me3  ENCFF399ACM H3K36me3    Data format 
     ENCFF402FCT_H3K4me3  ENCFF402FCT H3K4me3    Data format 
     ENCFF409AKL_H3K27ac  ENCFF409AKL H3K27ac    Data format 
     ENCFF423AQA_H3K36me3  ENCFF423AQA H3K36me3    Data format 
     ENCFF469AKO_H3K4me3  ENCFF469AKO H3K4me3    Data format 
     ENCFF474YFT_microRNA-seq  ENCFF474YFT microRNA-seq    Data format 
     ENCFF506FGU_H3K9ac  ENCFF506FGU H3K9ac    Data format 
     ENCFF520INY_H3K9me3  ENCFF520INY H3K9me3    Data format 
     ENCFF544EIE_microRNA-seq  ENCFF544EIE microRNA-seq    Data format 
     ENCFF549CTZ_polyA_plus_RNA-seq  ENCFF549CTZ polyA_plus_RNA-seq    Data format 
     ENCFF552IVP_H3K27me3  ENCFF552IVP H3K27me3    Data format 
     ENCFF553VAP_microRNA-seq  ENCFF553VAP microRNA-seq    Data format 
     ENCFF555JUK_polyA_plus_RNA-seq  ENCFF555JUK polyA_plus_RNA-seq    Data format 
     ENCFF569YZZ_polyA_plus_RNA-seq  ENCFF569YZZ polyA_plus_RNA-seq    Data format 
     ENCFF586EPU_H3K27me3  ENCFF586EPU H3K27me3    Data format 
     ENCFF592MXT_H3K27ac  ENCFF592MXT H3K27ac    Data format 
     ENCFF615SIJ_H3K4me3  ENCFF615SIJ H3K4me3    Data format 
     ENCFF619XBH_H3K4me3  ENCFF619XBH H3K4me3    Data format 
     ENCFF622NVF_H3K4me1  ENCFF622NVF H3K4me1    Data format 
     ENCFF637MFA_H3K4me1  ENCFF637MFA H3K4me1    Data format 
     ENCFF650WIY_H3K9me3  ENCFF650WIY H3K9me3    Data format 
     ENCFF666ZON_microRNA-seq  ENCFF666ZON microRNA-seq    Data format 
     ENCFF686JJQ_H3K27ac  ENCFF686JJQ H3K27ac    Data format 
     ENCFF717YKP_H3K4me1  ENCFF717YKP H3K4me1    Data format 
     ENCFF718SOR_H3K9ac  ENCFF718SOR H3K9ac    Data format 
     ENCFF726BEN_H3K27me3  ENCFF726BEN H3K27me3    Data format 
     ENCFF727BPT_H3K9me3  ENCFF727BPT H3K9me3    Data format 
     ENCFF740LLT_H3K9ac  ENCFF740LLT H3K9ac    Data format 
     ENCFF762XAN_polyA_plus_RNA-seq  ENCFF762XAN polyA_plus_RNA-seq    Data format 
     ENCFF779GTF_H3K9me3  ENCFF779GTF H3K9me3    Data format 
     ENCFF798PVX_polyA_plus_RNA-seq  ENCFF798PVX polyA_plus_RNA-seq    Data format 
     ENCFF803HYB_microRNA-seq  ENCFF803HYB microRNA-seq    Data format 
     ENCFF875WOF_H3K36me3  ENCFF875WOF H3K36me3    Data format 
     ENCFF877NXH_H3K36me3  ENCFF877NXH H3K36me3    Data format 
     ENCFF893FXF_microRNA-seq  ENCFF893FXF microRNA-seq    Data format 
     ENCFF921YAQ_H3K27me3  ENCFF921YAQ H3K27me3    Data format 
     ENCFF931BVK_H3K27ac  ENCFF931BVK H3K27ac    Data format 
     ENCFF941NXO_H3K27me3  ENCFF941NXO H3K27me3    Data format 
     ENCFF963BKH_H3K27ac  ENCFF963BKH H3K27ac    Data format 
     ENCFF963COF_H3K36me3  ENCFF963COF H3K36me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:effector_memory_CD4-positive,_alpha-beta_T_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF