Sample Summary endodermal_cell Summary Track Settings
 
Roadmap Epigenome endodermal_cell Summary

Track collection: Sample Summary

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All subtracks:
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     ENCFF007XGP_H3K4me1  ENCFF007XGP H3K4me1    Data format 
     ENCFF008LNU_H3K36me3  ENCFF008LNU H3K36me3    Data format 
     ENCFF035GMC_H3K9ac  ENCFF035GMC H3K9ac    Data format 
     ENCFF044DUY_H3K27me3  ENCFF044DUY H3K27me3    Data format 
     ENCFF049UUP_H3K9ac  ENCFF049UUP H3K9ac    Data format 
     ENCFF054UGM_H3K27ac  ENCFF054UGM H3K27ac    Data format 
     ENCFF060CIB_WGBS  ENCFF060CIB WGBS    Data format 
     ENCFF067XMY_H3K27me3  ENCFF067XMY H3K27me3    Data format 
     ENCFF084BWL_H3K4me3  ENCFF084BWL H3K4me3    Data format 
     ENCFF086TQT_H3K4me1  ENCFF086TQT H3K4me1    Data format 
     ENCFF088JIN_polyA_plus_RNA-seq  ENCFF088JIN polyA_plus_RNA-seq    Data format 
     ENCFF103VJA_H3K27ac  ENCFF103VJA H3K27ac    Data format 
     ENCFF109FOV_WGBS  ENCFF109FOV WGBS    Data format 
     ENCFF135LDU_polyA_plus_RNA-seq  ENCFF135LDU polyA_plus_RNA-seq    Data format 
     ENCFF140JEW_polyA_plus_RNA-seq  ENCFF140JEW polyA_plus_RNA-seq    Data format 
     ENCFF150BAS_H3K4me1  ENCFF150BAS H3K4me1    Data format 
     ENCFF156YLW_H3K27ac  ENCFF156YLW H3K27ac    Data format 
     ENCFF171SIP_H3K36me3  ENCFF171SIP H3K36me3    Data format 
     ENCFF182BJC_H3K4me1  ENCFF182BJC H3K4me1    Data format 
     ENCFF185PIA_H3K36me3  ENCFF185PIA H3K36me3    Data format 
     ENCFF189YAN_H3K27me3  ENCFF189YAN H3K27me3    Data format 
     ENCFF204DWU_H3K4me3  ENCFF204DWU H3K4me3    Data format 
     ENCFF206WBC_H3K4me3  ENCFF206WBC H3K4me3    Data format 
     ENCFF208OYB_H3K4me3  ENCFF208OYB H3K4me3    Data format 
     ENCFF216PNW_H3K27ac  ENCFF216PNW H3K27ac    Data format 
     ENCFF246EAZ_H3K4me3  ENCFF246EAZ H3K4me3    Data format 
     ENCFF248RNQ_H3K27me3  ENCFF248RNQ H3K27me3    Data format 
     ENCFF259IZT_H3K4me1  ENCFF259IZT H3K4me1    Data format 
     ENCFF262AVO_H3K4me1  ENCFF262AVO H3K4me1    Data format 
     ENCFF269PPY_H3K36me3  ENCFF269PPY H3K36me3    Data format 
     ENCFF272CKT_H3K4me3  ENCFF272CKT H3K4me3    Data format 
     ENCFF289EPB_H3K4me3  ENCFF289EPB H3K4me3    Data format 
     ENCFF289KRA_H3K36me3  ENCFF289KRA H3K36me3    Data format 
     ENCFF297VRP_H3K36me3  ENCFF297VRP H3K36me3    Data format 
     ENCFF299WEJ_H3K9me3  ENCFF299WEJ H3K9me3    Data format 
     ENCFF316TLW_H3K4me3  ENCFF316TLW H3K4me3    Data format 
     ENCFF319SHS_H3K36me3  ENCFF319SHS H3K36me3    Data format 
     ENCFF331FRT_H3K9me3  ENCFF331FRT H3K9me3    Data format 
     ENCFF331YKZ_H3K4me1  ENCFF331YKZ H3K4me1    Data format 
     ENCFF344GOI_H3K27ac  ENCFF344GOI H3K27ac    Data format 
     ENCFF352YWQ_H3K4me3  ENCFF352YWQ H3K4me3    Data format 
     ENCFF361PUC_H3K36me3  ENCFF361PUC H3K36me3    Data format 
     ENCFF367GIQ_H3K9ac  ENCFF367GIQ H3K9ac    Data format 
     ENCFF369AFT_H3K9ac  ENCFF369AFT H3K9ac    Data format 
     ENCFF379PZD_H3K27ac  ENCFF379PZD H3K27ac    Data format 
     ENCFF388EJR_H3K4me1  ENCFF388EJR H3K4me1    Data format 
     ENCFF393QLM_polyA_plus_RNA-seq  ENCFF393QLM polyA_plus_RNA-seq    Data format 
     ENCFF407BBQ_polyA_plus_RNA-seq  ENCFF407BBQ polyA_plus_RNA-seq    Data format 
     ENCFF407ICN_WGBS  ENCFF407ICN WGBS    Data format 
     ENCFF410ICL_H3K27ac  ENCFF410ICL H3K27ac    Data format 
     ENCFF414RPP_polyA_plus_RNA-seq  ENCFF414RPP polyA_plus_RNA-seq    Data format 
     ENCFF443PIC_H3K9me3  ENCFF443PIC H3K9me3    Data format 
     ENCFF462HCZ_polyA_plus_RNA-seq  ENCFF462HCZ polyA_plus_RNA-seq    Data format 
     ENCFF478GLT_H3K4me3  ENCFF478GLT H3K4me3    Data format 
     ENCFF505VXN_H3K4me1  ENCFF505VXN H3K4me1    Data format 
     ENCFF513WLE_H3K9ac  ENCFF513WLE H3K9ac    Data format 
     ENCFF518YJS_H3K4me1  ENCFF518YJS H3K4me1    Data format 
     ENCFF531ZEC_H3K9me3  ENCFF531ZEC H3K9me3    Data format 
     ENCFF535HFE_polyA_plus_RNA-seq  ENCFF535HFE polyA_plus_RNA-seq    Data format 
     ENCFF542WYJ_H3K4me3  ENCFF542WYJ H3K4me3    Data format 
     ENCFF561BGB_H3K4me1  ENCFF561BGB H3K4me1    Data format 
     ENCFF573DEM_H3K27ac  ENCFF573DEM H3K27ac    Data format 
     ENCFF586CWY_H3K9ac  ENCFF586CWY H3K9ac    Data format 
     ENCFF609HON_H3K27me3  ENCFF609HON H3K27me3    Data format 
     ENCFF625JIM_H3K9me3  ENCFF625JIM H3K9me3    Data format 
     ENCFF631LXU_H3K4me1  ENCFF631LXU H3K4me1    Data format 
     ENCFF643KFD_H3K27ac  ENCFF643KFD H3K27ac    Data format 
     ENCFF647MIB_polyA_plus_RNA-seq  ENCFF647MIB polyA_plus_RNA-seq    Data format 
     ENCFF657CGM_H3K4me1  ENCFF657CGM H3K4me1    Data format 
     ENCFF672MBR_H3K36me3  ENCFF672MBR H3K36me3    Data format 
     ENCFF690EWZ_H3K9ac  ENCFF690EWZ H3K9ac    Data format 
     ENCFF711HLD_H3K36me3  ENCFF711HLD H3K36me3    Data format 
     ENCFF711TRT_H3K27me3  ENCFF711TRT H3K27me3    Data format 
     ENCFF713DCZ_H3K9me3  ENCFF713DCZ H3K9me3    Data format 
     ENCFF716NQV_H3K9ac  ENCFF716NQV H3K9ac    Data format 
     ENCFF745BOJ_H3K27me3  ENCFF745BOJ H3K27me3    Data format 
     ENCFF749LPB_H3K9me3  ENCFF749LPB H3K9me3    Data format 
     ENCFF754SFP_H3K27me3  ENCFF754SFP H3K27me3    Data format 
     ENCFF760APZ_H3K4me1  ENCFF760APZ H3K4me1    Data format 
     ENCFF775NPV_polyA_plus_RNA-seq  ENCFF775NPV polyA_plus_RNA-seq    Data format 
     ENCFF779VNC_H3K9me3  ENCFF779VNC H3K9me3    Data format 
     ENCFF788SBZ_H3K9me3  ENCFF788SBZ H3K9me3    Data format 
     ENCFF791THH_H3K36me3  ENCFF791THH H3K36me3    Data format 
     ENCFF800VLD_WGBS  ENCFF800VLD WGBS    Data format 
     ENCFF813HLF_H3K9ac  ENCFF813HLF H3K9ac    Data format 
     ENCFF832ZON_H3K27ac  ENCFF832ZON H3K27ac    Data format 
     ENCFF837YRV_H3K9me3  ENCFF837YRV H3K9me3    Data format 
     ENCFF843QJT_H3K4me1  ENCFF843QJT H3K4me1    Data format 
     ENCFF844YMH_H3K27me3  ENCFF844YMH H3K27me3    Data format 
     ENCFF864CEK_H3K27ac  ENCFF864CEK H3K27ac    Data format 
     ENCFF870YQC_H3K9ac  ENCFF870YQC H3K9ac    Data format 
     ENCFF871YGU_H3K4me1  ENCFF871YGU H3K4me1    Data format 
     ENCFF875FBD_H3K27me3  ENCFF875FBD H3K27me3    Data format 
     ENCFF882EVH_H3K27me3  ENCFF882EVH H3K27me3    Data format 
     ENCFF890EZE_H3K9me3  ENCFF890EZE H3K9me3    Data format 
     ENCFF909KQX_H3K4me3  ENCFF909KQX H3K4me3    Data format 
     ENCFF918PBB_H3K9ac  ENCFF918PBB H3K9ac    Data format 
     ENCFF921BNR_H3K27ac  ENCFF921BNR H3K27ac    Data format 
     ENCFF927IDR_H3K36me3  ENCFF927IDR H3K36me3    Data format 
     ENCFF932LFM_H3K27me3  ENCFF932LFM H3K27me3    Data format 
     ENCFF971QDA_polyA_plus_RNA-seq  ENCFF971QDA polyA_plus_RNA-seq    Data format 
     ENCFF973GES_H3K9ac  ENCFF973GES H3K9ac    Data format 
     ENCFF978TXT_polyA_plus_RNA-seq  ENCFF978TXT polyA_plus_RNA-seq    Data format 
     ENCFF990BDY_H3K9me3  ENCFF990BDY H3K9me3    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:plus_strand_signal_of_all_reads
Sample:endocrine_pancreas
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF