Sample Summary esophagus Summary Track Settings
 
Roadmap Epigenome esophagus Summary

Track collection: Sample Summary

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     ENCFF030YFF_H3K9me3  ENCFF030YFF H3K9me3    Data format 
     ENCFF042ZDD_H3K36me3  ENCFF042ZDD H3K36me3    Data format 
     ENCFF048QUZ_H3K9me3  ENCFF048QUZ H3K9me3    Data format 
     ENCFF140RFV_H3K27me3  ENCFF140RFV H3K27me3    Data format 
     ENCFF153OFF_H3K27ac  ENCFF153OFF H3K27ac    Data format 
     ENCFF223CEC_H3K4me3  ENCFF223CEC H3K4me3    Data format 
     ENCFF243TWF_H3K9me3  ENCFF243TWF H3K9me3    Data format 
     ENCFF294WWV_WGBS  ENCFF294WWV WGBS    Data format 
     ENCFF314RQP_H3K4me1  ENCFF314RQP H3K4me1    Data format 
     ENCFF322RWX_H3K27ac  ENCFF322RWX H3K27ac    Data format 
     ENCFF328MVJ_polyA_plus_RNA-seq  ENCFF328MVJ polyA_plus_RNA-seq    Data format 
     ENCFF339HGV_H3K27me3  ENCFF339HGV H3K27me3    Data format 
     ENCFF381IAJ_H3K9me3  ENCFF381IAJ H3K9me3    Data format 
     ENCFF385ZVU_H3K27ac  ENCFF385ZVU H3K27ac    Data format 
     ENCFF418JJK_H3K4me3  ENCFF418JJK H3K4me3    Data format 
     ENCFF424QFB_H3K27me3  ENCFF424QFB H3K27me3    Data format 
     ENCFF427KCB_H3K9me3  ENCFF427KCB H3K9me3    Data format 
     ENCFF432ZKH_H3K36me3  ENCFF432ZKH H3K36me3    Data format 
     ENCFF442KVB_H3K4me1  ENCFF442KVB H3K4me1    Data format 
     ENCFF455IBS_polyA_plus_RNA-seq  ENCFF455IBS polyA_plus_RNA-seq    Data format 
     ENCFF457MBW_H3K27ac  ENCFF457MBW H3K27ac    Data format 
     ENCFF477EGI_H3K4me3  ENCFF477EGI H3K4me3    Data format 
     ENCFF481PEG_H3K9me3  ENCFF481PEG H3K9me3    Data format 
     ENCFF485BWC_H3K36me3  ENCFF485BWC H3K36me3    Data format 
     ENCFF486EQJ_H3K36me3  ENCFF486EQJ H3K36me3    Data format 
     ENCFF487HQC_H3K4me1  ENCFF487HQC H3K4me1    Data format 
     ENCFF489OLB_polyA_plus_RNA-seq  ENCFF489OLB polyA_plus_RNA-seq    Data format 
     ENCFF537DMH_polyA_plus_RNA-seq  ENCFF537DMH polyA_plus_RNA-seq    Data format 
     ENCFF546GZQ_H3K36me3  ENCFF546GZQ H3K36me3    Data format 
     ENCFF546SKL_polyA_plus_RNA-seq  ENCFF546SKL polyA_plus_RNA-seq    Data format 
     ENCFF557GNE_H3K4me1  ENCFF557GNE H3K4me1    Data format 
     ENCFF564THK_polyA_plus_RNA-seq  ENCFF564THK polyA_plus_RNA-seq    Data format 
     ENCFF609NAD_polyA_plus_RNA-seq  ENCFF609NAD polyA_plus_RNA-seq    Data format 
     ENCFF610WBM_H3K27ac  ENCFF610WBM H3K27ac    Data format 
     ENCFF620QPO_H3K27ac  ENCFF620QPO H3K27ac    Data format 
     ENCFF626NDH_polyA_plus_RNA-seq  ENCFF626NDH polyA_plus_RNA-seq    Data format 
     ENCFF633LAF_H3K4me3  ENCFF633LAF H3K4me3    Data format 
     ENCFF650WBA_H3K9me3  ENCFF650WBA H3K9me3    Data format 
     ENCFF658KLF_H3K4me3  ENCFF658KLF H3K4me3    Data format 
     ENCFF659WMK_H3K27me3  ENCFF659WMK H3K27me3    Data format 
     ENCFF661CVI_H3K4me1  ENCFF661CVI H3K4me1    Data format 
     ENCFF662KUD_H3K4me3  ENCFF662KUD H3K4me3    Data format 
     ENCFF669GZJ_H3K27me3  ENCFF669GZJ H3K27me3    Data format 
     ENCFF674MJX_polyA_plus_RNA-seq  ENCFF674MJX polyA_plus_RNA-seq    Data format 
     ENCFF683EMI_H3K4me1  ENCFF683EMI H3K4me1    Data format 
     ENCFF683UYI_polyA_plus_RNA-seq  ENCFF683UYI polyA_plus_RNA-seq    Data format 
     ENCFF693CEC_polyA_plus_RNA-seq  ENCFF693CEC polyA_plus_RNA-seq    Data format 
     ENCFF693VYF_H3K36me3  ENCFF693VYF H3K36me3    Data format 
     ENCFF705EIQ_polyA_plus_RNA-seq  ENCFF705EIQ polyA_plus_RNA-seq    Data format 
     ENCFF722OSG_H3K27me3  ENCFF722OSG H3K27me3    Data format 
     ENCFF753ZLK_H3K36me3  ENCFF753ZLK H3K36me3    Data format 
     ENCFF772PDE_H3K4me3  ENCFF772PDE H3K4me3    Data format 
     ENCFF807YWD_H3K27me3  ENCFF807YWD H3K27me3    Data format 
     ENCFF809HLO_H3K4me1  ENCFF809HLO H3K4me1    Data format 
     ENCFF853TUI_polyA_plus_RNA-seq  ENCFF853TUI polyA_plus_RNA-seq    Data format 
     ENCFF860ARQ_H3K4me1  ENCFF860ARQ H3K4me1    Data format 
     ENCFF889NGP_H3K27me3  ENCFF889NGP H3K27me3    Data format 
     ENCFF911PGT_H3K9me3  ENCFF911PGT H3K9me3    Data format 
     ENCFF915WBG_polyA_plus_RNA-seq  ENCFF915WBG polyA_plus_RNA-seq    Data format 
     ENCFF941GTX_polyA_plus_RNA-seq  ENCFF941GTX polyA_plus_RNA-seq    Data format 
     ENCFF947UUA_H3K27ac  ENCFF947UUA H3K27ac    Data format 
     ENCFF951JCX_H3K27ac  ENCFF951JCX H3K27ac    Data format 
     ENCFF983QVB_H3K4me3  ENCFF983QVB H3K4me3    Data format 
     ENCFF988EBT_polyA_plus_RNA-seq  ENCFF988EBT polyA_plus_RNA-seq    Data format 
     ENCFF993WIR_H3K36me3  ENCFF993WIR H3K36me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:ES-I3
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF