Sample Summary fibroblast_of_breast Summary Track Settings
 
Roadmap Epigenome fibroblast_of_breast Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

Display mode:       Reset to defaults

Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF029PJC_H3K27me3  ENCFF029PJC H3K27me3    Data format 
     ENCFF060JDR_H3K27ac  ENCFF060JDR H3K27ac    Data format 
     ENCFF073ODD_H3K4me3  ENCFF073ODD H3K4me3    Data format 
     ENCFF085DEJ_H3K4me1  ENCFF085DEJ H3K4me1    Data format 
     ENCFF104TTM_microRNA-seq  ENCFF104TTM microRNA-seq    Data format 
     ENCFF108WFI_polyA_plus_RNA-seq  ENCFF108WFI polyA_plus_RNA-seq    Data format 
     ENCFF116FZG_H3K4me3  ENCFF116FZG H3K4me3    Data format 
     ENCFF141NUW_microRNA-seq  ENCFF141NUW microRNA-seq    Data format 
     ENCFF157NOO_H3K36me3  ENCFF157NOO H3K36me3    Data format 
     ENCFF164FXP_H3K36me3  ENCFF164FXP H3K36me3    Data format 
     ENCFF165UJO_H3K4me3  ENCFF165UJO H3K4me3    Data format 
     ENCFF175WDH_H3K4me3  ENCFF175WDH H3K4me3    Data format 
     ENCFF183MQW_H3K27ac  ENCFF183MQW H3K27ac    Data format 
     ENCFF193GYL_H3K27ac  ENCFF193GYL H3K27ac    Data format 
     ENCFF207JWH_H3K4me3  ENCFF207JWH H3K4me3    Data format 
     ENCFF244FXK_H3K4me3  ENCFF244FXK H3K4me3    Data format 
     ENCFF244QMA_H3K27me3  ENCFF244QMA H3K27me3    Data format 
     ENCFF246LOX_H3K4me3  ENCFF246LOX H3K4me3    Data format 
     ENCFF249EJC_H3K27me3  ENCFF249EJC H3K27me3    Data format 
     ENCFF260HIZ_H3K4me1  ENCFF260HIZ H3K4me1    Data format 
     ENCFF268JQO_H3K36me3  ENCFF268JQO H3K36me3    Data format 
     ENCFF319RAC_polyA_plus_RNA-seq  ENCFF319RAC polyA_plus_RNA-seq    Data format 
     ENCFF343SMH_polyA_plus_RNA-seq  ENCFF343SMH polyA_plus_RNA-seq    Data format 
     ENCFF366ARN_H3K4me1  ENCFF366ARN H3K4me1    Data format 
     ENCFF403UEP_microRNA-seq  ENCFF403UEP microRNA-seq    Data format 
     ENCFF419LTQ_polyA_plus_RNA-seq  ENCFF419LTQ polyA_plus_RNA-seq    Data format 
     ENCFF422UWB_H3K27ac  ENCFF422UWB H3K27ac    Data format 
     ENCFF439ITK_polyA_plus_RNA-seq  ENCFF439ITK polyA_plus_RNA-seq    Data format 
     ENCFF442QSP_H3K4me1  ENCFF442QSP H3K4me1    Data format 
     ENCFF449VAS_H3K27me3  ENCFF449VAS H3K27me3    Data format 
     ENCFF455JTU_H3K4me1  ENCFF455JTU H3K4me1    Data format 
     ENCFF460JLK_H3K27ac  ENCFF460JLK H3K27ac    Data format 
     ENCFF475LSN_H3K27ac  ENCFF475LSN H3K27ac    Data format 
     ENCFF479WYV_H3K36me3  ENCFF479WYV H3K36me3    Data format 
     ENCFF494OBF_H3K9me3  ENCFF494OBF H3K9me3    Data format 
     ENCFF509ZBB_H3K27me3  ENCFF509ZBB H3K27me3    Data format 
     ENCFF567IYD_H3K27me3  ENCFF567IYD H3K27me3    Data format 
     ENCFF568YMA_H3K27me3  ENCFF568YMA H3K27me3    Data format 
     ENCFF642TZH_H3K36me3  ENCFF642TZH H3K36me3    Data format 
     ENCFF658JAE_H3K4me3  ENCFF658JAE H3K4me3    Data format 
     ENCFF663VGM_H3K9me3  ENCFF663VGM H3K9me3    Data format 
     ENCFF666BXC_microRNA-seq  ENCFF666BXC microRNA-seq    Data format 
     ENCFF669BPF_H3K27me3  ENCFF669BPF H3K27me3    Data format 
     ENCFF681OZM_H3K4me1  ENCFF681OZM H3K4me1    Data format 
     ENCFF683ZNQ_H3K27ac  ENCFF683ZNQ H3K27ac    Data format 
     ENCFF693VMB_H3K36me3  ENCFF693VMB H3K36me3    Data format 
     ENCFF694DOG_H3K4me1  ENCFF694DOG H3K4me1    Data format 
     ENCFF694LUU_H3K36me3  ENCFF694LUU H3K36me3    Data format 
     ENCFF694TKD_microRNA-seq  ENCFF694TKD microRNA-seq    Data format 
     ENCFF707QDE_microRNA-seq  ENCFF707QDE microRNA-seq    Data format 
     ENCFF709TDJ_H3K36me3  ENCFF709TDJ H3K36me3    Data format 
     ENCFF754IPD_H3K9me3  ENCFF754IPD H3K9me3    Data format 
     ENCFF757PWA_polyA_plus_RNA-seq  ENCFF757PWA polyA_plus_RNA-seq    Data format 
     ENCFF781BZC_H3K9me3  ENCFF781BZC H3K9me3    Data format 
     ENCFF793LGY_polyA_plus_RNA-seq  ENCFF793LGY polyA_plus_RNA-seq    Data format 
     ENCFF834TNO_microRNA-seq  ENCFF834TNO microRNA-seq    Data format 
     ENCFF934UNW_microRNA-seq  ENCFF934UNW microRNA-seq    Data format 
     ENCFF953AYJ_H3K4me1  ENCFF953AYJ H3K4me1    Data format 
     ENCFF971LUI_H3K27ac  ENCFF971LUI H3K27ac    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:esophagus
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF