Sample Summary forelimb_muscle Summary Track Settings
 
Roadmap Epigenome forelimb_muscle Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF016KEV_DNase-seq  ENCFF016KEV DNase-seq    Data format 
     ENCFF149KCF_polyA_plus_RNA-seq  ENCFF149KCF polyA_plus_RNA-seq    Data format 
     ENCFF195HNW_polyA_plus_RNA-seq  ENCFF195HNW polyA_plus_RNA-seq    Data format 
     ENCFF400XKV_DNase-seq  ENCFF400XKV DNase-seq    Data format 
     ENCFF438CNK_polyA_plus_RNA-seq  ENCFF438CNK polyA_plus_RNA-seq    Data format 
Metadata:
Assay:DNase-seq
OutputType:read-depth_normalized_signal
Sample:fibroblast_of_upper_back_skin
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF