Sample Summary foreskin_fibroblast Summary Track Settings
 
Roadmap Epigenome foreskin_fibroblast Summary

Track collection: Sample Summary

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     ENCFF016CHE_H3K4me3  ENCFF016CHE H3K4me3    Data format 
     ENCFF027GCX_H3K9me3  ENCFF027GCX H3K9me3    Data format 
     ENCFF027GWJ_H3K27me3  ENCFF027GWJ H3K27me3    Data format 
     ENCFF033QQE_H3K4me1  ENCFF033QQE H3K4me1    Data format 
     ENCFF036OQP_microRNA-seq  ENCFF036OQP microRNA-seq    Data format 
     ENCFF044FIZ_H3K27me3  ENCFF044FIZ H3K27me3    Data format 
     ENCFF046WCC_H3K9me3  ENCFF046WCC H3K9me3    Data format 
     ENCFF053RCZ_microRNA-seq  ENCFF053RCZ microRNA-seq    Data format 
     ENCFF061VBQ_H3K4me1  ENCFF061VBQ H3K4me1    Data format 
     ENCFF063DGK_H3K9me3  ENCFF063DGK H3K9me3    Data format 
     ENCFF069VNI_microRNA-seq  ENCFF069VNI microRNA-seq    Data format 
     ENCFF070SER_H3K27ac  ENCFF070SER H3K27ac    Data format 
     ENCFF074HNE_H3K27ac  ENCFF074HNE H3K27ac    Data format 
     ENCFF078JZB_H3K27ac  ENCFF078JZB H3K27ac    Data format 
     ENCFF082NSH_H3K4me3  ENCFF082NSH H3K4me3    Data format 
     ENCFF085WRZ_H3K27me3  ENCFF085WRZ H3K27me3    Data format 
     ENCFF089POZ_polyA_plus_RNA-seq  ENCFF089POZ polyA_plus_RNA-seq    Data format 
     ENCFF090HJP_H3K36me3  ENCFF090HJP H3K36me3    Data format 
     ENCFF113YFF_DNase-seq  ENCFF113YFF DNase-seq    Data format 
     ENCFF114QJF_H3K9me3  ENCFF114QJF H3K9me3    Data format 
     ENCFF123FVI_H3K4me3  ENCFF123FVI H3K4me3    Data format 
     ENCFF129OJV_H3K4me3  ENCFF129OJV H3K4me3    Data format 
     ENCFF138QGB_H3K4me3  ENCFF138QGB H3K4me3    Data format 
     ENCFF154AMZ_H3K27ac  ENCFF154AMZ H3K27ac    Data format 
     ENCFF162TYQ_H3K27me3  ENCFF162TYQ H3K27me3    Data format 
     ENCFF168UPV_H3K27ac  ENCFF168UPV H3K27ac    Data format 
     ENCFF179BUG_H3K27me3  ENCFF179BUG H3K27me3    Data format 
     ENCFF216ZGD_microRNA-seq  ENCFF216ZGD microRNA-seq    Data format 
     ENCFF235XAH_H3K4me1  ENCFF235XAH H3K4me1    Data format 
     ENCFF245DTD_H3K27me3  ENCFF245DTD H3K27me3    Data format 
     ENCFF261OJD_DNase-seq  ENCFF261OJD DNase-seq    Data format 
     ENCFF286SVO_H3K27me3  ENCFF286SVO H3K27me3    Data format 
     ENCFF292FFG_H3K27ac  ENCFF292FFG H3K27ac    Data format 
     ENCFF292NMS_H3K27ac  ENCFF292NMS H3K27ac    Data format 
     ENCFF305OWV_polyA_plus_RNA-seq  ENCFF305OWV polyA_plus_RNA-seq    Data format 
     ENCFF308QXV_H3K36me3  ENCFF308QXV H3K36me3    Data format 
     ENCFF312ZBL_H3K36me3  ENCFF312ZBL H3K36me3    Data format 
     ENCFF321DOQ_H3K27ac  ENCFF321DOQ H3K27ac    Data format 
     ENCFF329FKR_DNase-seq  ENCFF329FKR DNase-seq    Data format 
     ENCFF345DEK_H3K4me3  ENCFF345DEK H3K4me3    Data format 
     ENCFF352ESC_H3K27ac  ENCFF352ESC H3K27ac    Data format 
     ENCFF360IVI_H3K27ac  ENCFF360IVI H3K27ac    Data format 
     ENCFF362ZPH_microRNA-seq  ENCFF362ZPH microRNA-seq    Data format 
     ENCFF366GCX_DNase-seq  ENCFF366GCX DNase-seq    Data format 
     ENCFF372PAA_H3K36me3  ENCFF372PAA H3K36me3    Data format 
     ENCFF388QVC_H3K4me3  ENCFF388QVC H3K4me3    Data format 
     ENCFF402LWA_H3K27me3  ENCFF402LWA H3K27me3    Data format 
     ENCFF403YLO_H3K27ac  ENCFF403YLO H3K27ac    Data format 
     ENCFF421TPV_H3K27ac  ENCFF421TPV H3K27ac    Data format 
     ENCFF423TYW_H3K27me3  ENCFF423TYW H3K27me3    Data format 
     ENCFF429OPR_H3K9me3  ENCFF429OPR H3K9me3    Data format 
     ENCFF449DEA_H3K4me1  ENCFF449DEA H3K4me1    Data format 
     ENCFF451EDD_H3K4me1  ENCFF451EDD H3K4me1    Data format 
     ENCFF452BJP_H3K27ac  ENCFF452BJP H3K27ac    Data format 
     ENCFF458VZJ_H3K36me3  ENCFF458VZJ H3K36me3    Data format 
     ENCFF460IET_H3K27me3  ENCFF460IET H3K27me3    Data format 
     ENCFF470FYM_polyA_plus_RNA-seq  ENCFF470FYM polyA_plus_RNA-seq    Data format 
     ENCFF507JDZ_H3K4me3  ENCFF507JDZ H3K4me3    Data format 
     ENCFF509UMN_H3K27ac  ENCFF509UMN H3K27ac    Data format 
     ENCFF513MJF_H3K36me3  ENCFF513MJF H3K36me3    Data format 
     ENCFF515EEL_H3K27me3  ENCFF515EEL H3K27me3    Data format 
     ENCFF525LEH_H3K36me3  ENCFF525LEH H3K36me3    Data format 
     ENCFF542ZDG_H3K4me1  ENCFF542ZDG H3K4me1    Data format 
     ENCFF546BQY_H3K27me3  ENCFF546BQY H3K27me3    Data format 
     ENCFF560BAF_H3K4me3  ENCFF560BAF H3K4me3    Data format 
     ENCFF595BNN_H3K4me3  ENCFF595BNN H3K4me3    Data format 
     ENCFF600QVI_H3K4me3  ENCFF600QVI H3K4me3    Data format 
     ENCFF610XUT_H3K27me3  ENCFF610XUT H3K27me3    Data format 
     ENCFF621EOE_polyA_plus_RNA-seq  ENCFF621EOE polyA_plus_RNA-seq    Data format 
     ENCFF622DXS_polyA_plus_RNA-seq  ENCFF622DXS polyA_plus_RNA-seq    Data format 
     ENCFF627SRS_microRNA-seq  ENCFF627SRS microRNA-seq    Data format 
     ENCFF644IXQ_H3K4me1  ENCFF644IXQ H3K4me1    Data format 
     ENCFF663ECD_H3K36me3  ENCFF663ECD H3K36me3    Data format 
     ENCFF684ORO_microRNA-seq  ENCFF684ORO microRNA-seq    Data format 
     ENCFF697RBG_H3K27me3  ENCFF697RBG H3K27me3    Data format 
     ENCFF700IJS_H3K36me3  ENCFF700IJS H3K36me3    Data format 
     ENCFF712SXK_polyA_plus_RNA-seq  ENCFF712SXK polyA_plus_RNA-seq    Data format 
     ENCFF727MAA_polyA_plus_RNA-seq  ENCFF727MAA polyA_plus_RNA-seq    Data format 
     ENCFF744LCF_H3K27ac  ENCFF744LCF H3K27ac    Data format 
     ENCFF745BAW_H3K4me1  ENCFF745BAW H3K4me1    Data format 
     ENCFF749CZU_H3K36me3  ENCFF749CZU H3K36me3    Data format 
     ENCFF750CHG_H3K27me3  ENCFF750CHG H3K27me3    Data format 
     ENCFF752EEU_H3K27me3  ENCFF752EEU H3K27me3    Data format 
     ENCFF776BJS_H3K27me3  ENCFF776BJS H3K27me3    Data format 
     ENCFF794KCG_microRNA-seq  ENCFF794KCG microRNA-seq    Data format 
     ENCFF796ITQ_H3K27me3  ENCFF796ITQ H3K27me3    Data format 
     ENCFF820HNI_H3K27ac  ENCFF820HNI H3K27ac    Data format 
     ENCFF829BOS_H3K9me3  ENCFF829BOS H3K9me3    Data format 
     ENCFF838CFO_H3K9me3  ENCFF838CFO H3K9me3    Data format 
     ENCFF843ZKD_H3K36me3  ENCFF843ZKD H3K36me3    Data format 
     ENCFF865WML_H3K4me1  ENCFF865WML H3K4me1    Data format 
     ENCFF908RLV_H3K4me3  ENCFF908RLV H3K4me3    Data format 
     ENCFF923POI_H3K27me3  ENCFF923POI H3K27me3    Data format 
     ENCFF942PLK_H3K4me1  ENCFF942PLK H3K4me1    Data format 
     ENCFF946TXL_H3K9me3  ENCFF946TXL H3K9me3    Data format 
     ENCFF954UKB_H3K36me3  ENCFF954UKB H3K36me3    Data format 
     ENCFF965BHE_H3K27ac  ENCFF965BHE H3K27ac    Data format 
     ENCFF972TYZ_H3K4me1  ENCFF972TYZ H3K4me1    Data format 
     ENCFF976LAC_H3K27me3  ENCFF976LAC H3K27me3    Data format 
     ENCFF978ZWH_H3K27ac  ENCFF978ZWH H3K27ac    Data format 
     ENCFF984KYN_H3K27ac  ENCFF984KYN H3K27ac    Data format 
     ENCFF991GYP_H3K4me1  ENCFF991GYP H3K4me1    Data format 
     ENCFF996DCF_H3K27ac  ENCFF996DCF H3K27ac    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:minus_strand_signal_of_all_reads
Sample:fibroblast_of_breast
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF