Sample Summary foreskin_keratinocyte Summary Track Settings
 
Roadmap Epigenome foreskin_keratinocyte Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF011VAN_H3K27me3  ENCFF011VAN H3K27me3    Data format 
     ENCFF012IOB_microRNA-seq  ENCFF012IOB microRNA-seq    Data format 
     ENCFF027UPV_H3K27ac  ENCFF027UPV H3K27ac    Data format 
     ENCFF042DUU_H3K9me3  ENCFF042DUU H3K9me3    Data format 
     ENCFF061ZZS_H3K27ac  ENCFF061ZZS H3K27ac    Data format 
     ENCFF064KAR_H3K4me3  ENCFF064KAR H3K4me3    Data format 
     ENCFF078DJR_polyA_plus_RNA-seq  ENCFF078DJR polyA_plus_RNA-seq    Data format 
     ENCFF082DWP_H3K36me3  ENCFF082DWP H3K36me3    Data format 
     ENCFF090KPK_H3K9ac  ENCFF090KPK H3K9ac    Data format 
     ENCFF103CRE_H3K4me1  ENCFF103CRE H3K4me1    Data format 
     ENCFF112QOM_H3K36me3  ENCFF112QOM H3K36me3    Data format 
     ENCFF129TOP_polyA_plus_RNA-seq  ENCFF129TOP polyA_plus_RNA-seq    Data format 
     ENCFF137GVV_H3K36me3  ENCFF137GVV H3K36me3    Data format 
     ENCFF147GTF_microRNA-seq  ENCFF147GTF microRNA-seq    Data format 
     ENCFF152BXU_microRNA-seq  ENCFF152BXU microRNA-seq    Data format 
     ENCFF169WCN_microRNA-seq  ENCFF169WCN microRNA-seq    Data format 
     ENCFF178ZHP_H3K9ac  ENCFF178ZHP H3K9ac    Data format 
     ENCFF213XEB_microRNA-seq  ENCFF213XEB microRNA-seq    Data format 
     ENCFF219IGZ_H3K27me3  ENCFF219IGZ H3K27me3    Data format 
     ENCFF244XGU_microRNA-seq  ENCFF244XGU microRNA-seq    Data format 
     ENCFF282JXB_H3K27me3  ENCFF282JXB H3K27me3    Data format 
     ENCFF311FVV_H3K4me1  ENCFF311FVV H3K4me1    Data format 
     ENCFF319BIJ_H3K4me1  ENCFF319BIJ H3K4me1    Data format 
     ENCFF330RBM_H3K9ac  ENCFF330RBM H3K9ac    Data format 
     ENCFF340UKM_H3K27ac  ENCFF340UKM H3K27ac    Data format 
     ENCFF348YNA_microRNA-seq  ENCFF348YNA microRNA-seq    Data format 
     ENCFF380PKB_DNase-seq  ENCFF380PKB DNase-seq    Data format 
     ENCFF389MMR_H3K4me1  ENCFF389MMR H3K4me1    Data format 
     ENCFF389NLY_microRNA-seq  ENCFF389NLY microRNA-seq    Data format 
     ENCFF390GIR_H3K36me3  ENCFF390GIR H3K36me3    Data format 
     ENCFF400FLX_H3K27me3  ENCFF400FLX H3K27me3    Data format 
     ENCFF400LRG_polyA_plus_RNA-seq  ENCFF400LRG polyA_plus_RNA-seq    Data format 
     ENCFF413JBK_H3K4me1  ENCFF413JBK H3K4me1    Data format 
     ENCFF413OHJ_H3K9me3  ENCFF413OHJ H3K9me3    Data format 
     ENCFF414ICR_H3K4me3  ENCFF414ICR H3K4me3    Data format 
     ENCFF445CFV_microRNA-seq  ENCFF445CFV microRNA-seq    Data format 
     ENCFF453GDW_polyA_plus_RNA-seq  ENCFF453GDW polyA_plus_RNA-seq    Data format 
     ENCFF487DOQ_H3K4me3  ENCFF487DOQ H3K4me3    Data format 
     ENCFF487KWW_H3K9me3  ENCFF487KWW H3K9me3    Data format 
     ENCFF491HAF_H3K4me3  ENCFF491HAF H3K4me3    Data format 
     ENCFF514WYG_H3K36me3  ENCFF514WYG H3K36me3    Data format 
     ENCFF517FHJ_H3K4me3  ENCFF517FHJ H3K4me3    Data format 
     ENCFF526KNG_polyA_plus_RNA-seq  ENCFF526KNG polyA_plus_RNA-seq    Data format 
     ENCFF532UKG_H3K4me3  ENCFF532UKG H3K4me3    Data format 
     ENCFF547WYC_H3K9me3  ENCFF547WYC H3K9me3    Data format 
     ENCFF549CPU_H3K36me3  ENCFF549CPU H3K36me3    Data format 
     ENCFF551MMU_H3K4me1  ENCFF551MMU H3K4me1    Data format 
     ENCFF557STL_H3K4me3  ENCFF557STL H3K4me3    Data format 
     ENCFF558FNX_polyA_plus_RNA-seq  ENCFF558FNX polyA_plus_RNA-seq    Data format 
     ENCFF569MJW_DNase-seq  ENCFF569MJW DNase-seq    Data format 
     ENCFF583OMR_H3K36me3  ENCFF583OMR H3K36me3    Data format 
     ENCFF593GVE_H3K4me1  ENCFF593GVE H3K4me1    Data format 
     ENCFF596SAX_H3K9me3  ENCFF596SAX H3K9me3    Data format 
     ENCFF640MOC_H3K4me3  ENCFF640MOC H3K4me3    Data format 
     ENCFF647OZE_H3K4me3  ENCFF647OZE H3K4me3    Data format 
     ENCFF668TYD_H3K27me3  ENCFF668TYD H3K27me3    Data format 
     ENCFF671NUZ_H3K4me1  ENCFF671NUZ H3K4me1    Data format 
     ENCFF675CBC_H3K4me3  ENCFF675CBC H3K4me3    Data format 
     ENCFF686MZH_H3K36me3  ENCFF686MZH H3K36me3    Data format 
     ENCFF692VEZ_H3K27me3  ENCFF692VEZ H3K27me3    Data format 
     ENCFF718OSV_H3K27ac  ENCFF718OSV H3K27ac    Data format 
     ENCFF728ENE_H3K36me3  ENCFF728ENE H3K36me3    Data format 
     ENCFF733AZS_polyA_plus_RNA-seq  ENCFF733AZS polyA_plus_RNA-seq    Data format 
     ENCFF759THJ_microRNA-seq  ENCFF759THJ microRNA-seq    Data format 
     ENCFF762ZSH_H3K36me3  ENCFF762ZSH H3K36me3    Data format 
     ENCFF774OAL_microRNA-seq  ENCFF774OAL microRNA-seq    Data format 
     ENCFF777JUY_H3K4me1  ENCFF777JUY H3K4me1    Data format 
     ENCFF777XUS_H3K36me3  ENCFF777XUS H3K36me3    Data format 
     ENCFF780BHL_H3K27me3  ENCFF780BHL H3K27me3    Data format 
     ENCFF789XYN_H3K9me3  ENCFF789XYN H3K9me3    Data format 
     ENCFF794RKS_H3K36me3  ENCFF794RKS H3K36me3    Data format 
     ENCFF799EIL_H3K4me3  ENCFF799EIL H3K4me3    Data format 
     ENCFF808HFZ_H3K4me1  ENCFF808HFZ H3K4me1    Data format 
     ENCFF808NBH_microRNA-seq  ENCFF808NBH microRNA-seq    Data format 
     ENCFF814BQF_H3K9me3  ENCFF814BQF H3K9me3    Data format 
     ENCFF871YOY_H3K27me3  ENCFF871YOY H3K27me3    Data format 
     ENCFF875ZKP_H3K27me3  ENCFF875ZKP H3K27me3    Data format 
     ENCFF883VBW_H3K9me3  ENCFF883VBW H3K9me3    Data format 
     ENCFF885NDK_H3K27me3  ENCFF885NDK H3K27me3    Data format 
     ENCFF886CPP_H3K27me3  ENCFF886CPP H3K27me3    Data format 
     ENCFF888IWT_H3K4me1  ENCFF888IWT H3K4me1    Data format 
     ENCFF910KFI_DNase-seq  ENCFF910KFI DNase-seq    Data format 
     ENCFF927LSQ_H3K4me3  ENCFF927LSQ H3K4me3    Data format 
     ENCFF936NJL_H3K9ac  ENCFF936NJL H3K9ac    Data format 
     ENCFF964BOT_H3K4me1  ENCFF964BOT H3K4me1    Data format 
     ENCFF971NFK_DNase-seq  ENCFF971NFK DNase-seq    Data format 
     ENCFF973AOQ_H3K27me3  ENCFF973AOQ H3K27me3    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:minus_strand_signal_of_unique_reads
Sample:foreskin_fibroblast
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF