Sample Summary foreskin_melanocyte Summary Track Settings
 
Roadmap Epigenome foreskin_melanocyte Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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All subtracks:
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     ENCFF039TAO_H3K36me3  ENCFF039TAO H3K36me3    Data format 
     ENCFF054FZG_microRNA-seq  ENCFF054FZG microRNA-seq    Data format 
     ENCFF055PDB_microRNA-seq  ENCFF055PDB microRNA-seq    Data format 
     ENCFF057PEF_polyA_plus_RNA-seq  ENCFF057PEF polyA_plus_RNA-seq    Data format 
     ENCFF081CSP_H3K4me1  ENCFF081CSP H3K4me1    Data format 
     ENCFF089RTD_H3K4me3  ENCFF089RTD H3K4me3    Data format 
     ENCFF091PHQ_H3K9me3  ENCFF091PHQ H3K9me3    Data format 
     ENCFF093WZM_H3K27me3  ENCFF093WZM H3K27me3    Data format 
     ENCFF094VZY_H3K36me3  ENCFF094VZY H3K36me3    Data format 
     ENCFF101BWM_H3K27ac  ENCFF101BWM H3K27ac    Data format 
     ENCFF105YJV_H3K27me3  ENCFF105YJV H3K27me3    Data format 
     ENCFF117MFS_H3K27ac  ENCFF117MFS H3K27ac    Data format 
     ENCFF157FAU_H3K4me1  ENCFF157FAU H3K4me1    Data format 
     ENCFF168ZYA_H3K4me3  ENCFF168ZYA H3K4me3    Data format 
     ENCFF174WXW_H3K27ac  ENCFF174WXW H3K27ac    Data format 
     ENCFF203ZPN_H3K36me3  ENCFF203ZPN H3K36me3    Data format 
     ENCFF208ZNF_microRNA-seq  ENCFF208ZNF microRNA-seq    Data format 
     ENCFF209MUI_H3K4me3  ENCFF209MUI H3K4me3    Data format 
     ENCFF226ROM_DNase-seq  ENCFF226ROM DNase-seq    Data format 
     ENCFF261DSX_H3K4me3  ENCFF261DSX H3K4me3    Data format 
     ENCFF275DHM_H3K4me3  ENCFF275DHM H3K4me3    Data format 
     ENCFF286AZV_microRNA-seq  ENCFF286AZV microRNA-seq    Data format 
     ENCFF286VHS_H3K4me1  ENCFF286VHS H3K4me1    Data format 
     ENCFF287YSS_H3K4me1  ENCFF287YSS H3K4me1    Data format 
     ENCFF288VBS_H3K4me1  ENCFF288VBS H3K4me1    Data format 
     ENCFF288ZAK_polyA_plus_RNA-seq  ENCFF288ZAK polyA_plus_RNA-seq    Data format 
     ENCFF293HAU_H3K4me1  ENCFF293HAU H3K4me1    Data format 
     ENCFF300QFW_H3K36me3  ENCFF300QFW H3K36me3    Data format 
     ENCFF304TUY_H3K4me1  ENCFF304TUY H3K4me1    Data format 
     ENCFF315YRC_polyA_plus_RNA-seq  ENCFF315YRC polyA_plus_RNA-seq    Data format 
     ENCFF320XBY_H3K9ac  ENCFF320XBY H3K9ac    Data format 
     ENCFF321XWT_polyA_plus_RNA-seq  ENCFF321XWT polyA_plus_RNA-seq    Data format 
     ENCFF337BET_H3K27ac  ENCFF337BET H3K27ac    Data format 
     ENCFF349SKH_H3K27me3  ENCFF349SKH H3K27me3    Data format 
     ENCFF357GJC_H3K4me3  ENCFF357GJC H3K4me3    Data format 
     ENCFF361USR_H3K27ac  ENCFF361USR H3K27ac    Data format 
     ENCFF366TDQ_H3K9ac  ENCFF366TDQ H3K9ac    Data format 
     ENCFF368SOB_DNase-seq  ENCFF368SOB DNase-seq    Data format 
     ENCFF376KWR_H3K4me1  ENCFF376KWR H3K4me1    Data format 
     ENCFF376YFK_H3K9me3  ENCFF376YFK H3K9me3    Data format 
     ENCFF382BPX_H3K9me3  ENCFF382BPX H3K9me3    Data format 
     ENCFF385RCW_H3K27me3  ENCFF385RCW H3K27me3    Data format 
     ENCFF394OSZ_H3K36me3  ENCFF394OSZ H3K36me3    Data format 
     ENCFF401IKI_microRNA-seq  ENCFF401IKI microRNA-seq    Data format 
     ENCFF405ADY_microRNA-seq  ENCFF405ADY microRNA-seq    Data format 
     ENCFF422WVY_H3K4me1  ENCFF422WVY H3K4me1    Data format 
     ENCFF436UEN_H3K4me1  ENCFF436UEN H3K4me1    Data format 
     ENCFF439KUX_H3K9me3  ENCFF439KUX H3K9me3    Data format 
     ENCFF448DUT_H3K4me3  ENCFF448DUT H3K4me3    Data format 
     ENCFF466SOI_H3K9ac  ENCFF466SOI H3K9ac    Data format 
     ENCFF471ISK_microRNA-seq  ENCFF471ISK microRNA-seq    Data format 
     ENCFF477QEO_microRNA-seq  ENCFF477QEO microRNA-seq    Data format 
     ENCFF486LVI_H3K27me3  ENCFF486LVI H3K27me3    Data format 
     ENCFF520XMG_DNase-seq  ENCFF520XMG DNase-seq    Data format 
     ENCFF542WMB_H3K4me1  ENCFF542WMB H3K4me1    Data format 
     ENCFF543HMR_H3K4me3  ENCFF543HMR H3K4me3    Data format 
     ENCFF559XKO_H3K36me3  ENCFF559XKO H3K36me3    Data format 
     ENCFF565YXD_H3K27me3  ENCFF565YXD H3K27me3    Data format 
     ENCFF570GBL_microRNA-seq  ENCFF570GBL microRNA-seq    Data format 
     ENCFF580MXP_H3K27me3  ENCFF580MXP H3K27me3    Data format 
     ENCFF592MKK_H3K9me3  ENCFF592MKK H3K9me3    Data format 
     ENCFF594GUV_H3K9me3  ENCFF594GUV H3K9me3    Data format 
     ENCFF605DDX_polyA_plus_RNA-seq  ENCFF605DDX polyA_plus_RNA-seq    Data format 
     ENCFF606FMK_microRNA-seq  ENCFF606FMK microRNA-seq    Data format 
     ENCFF616NJM_microRNA-seq  ENCFF616NJM microRNA-seq    Data format 
     ENCFF629JMD_H3K27me3  ENCFF629JMD H3K27me3    Data format 
     ENCFF630DYN_microRNA-seq  ENCFF630DYN microRNA-seq    Data format 
     ENCFF631FFD_H3K27ac  ENCFF631FFD H3K27ac    Data format 
     ENCFF637INI_microRNA-seq  ENCFF637INI microRNA-seq    Data format 
     ENCFF637ZXZ_microRNA-seq  ENCFF637ZXZ microRNA-seq    Data format 
     ENCFF652VDE_H3K4me1  ENCFF652VDE H3K4me1    Data format 
     ENCFF662IZN_H3K4me1  ENCFF662IZN H3K4me1    Data format 
     ENCFF667WQY_polyA_plus_RNA-seq  ENCFF667WQY polyA_plus_RNA-seq    Data format 
     ENCFF684BHN_H3K4me3  ENCFF684BHN H3K4me3    Data format 
     ENCFF713AZQ_H3K4me3  ENCFF713AZQ H3K4me3    Data format 
     ENCFF718ZIG_H3K27me3  ENCFF718ZIG H3K27me3    Data format 
     ENCFF722ANX_microRNA-seq  ENCFF722ANX microRNA-seq    Data format 
     ENCFF737MUG_H3K9me3  ENCFF737MUG H3K9me3    Data format 
     ENCFF741YOP_polyA_plus_RNA-seq  ENCFF741YOP polyA_plus_RNA-seq    Data format 
     ENCFF752IGC_microRNA-seq  ENCFF752IGC microRNA-seq    Data format 
     ENCFF761DQP_H3K27ac  ENCFF761DQP H3K27ac    Data format 
     ENCFF771NBX_H3K4me1  ENCFF771NBX H3K4me1    Data format 
     ENCFF773GJX_microRNA-seq  ENCFF773GJX microRNA-seq    Data format 
     ENCFF775WTA_H3K36me3  ENCFF775WTA H3K36me3    Data format 
     ENCFF786LDZ_H3K4me1  ENCFF786LDZ H3K4me1    Data format 
     ENCFF792VYK_H3K4me1  ENCFF792VYK H3K4me1    Data format 
     ENCFF806CFX_H3K27me3  ENCFF806CFX H3K27me3    Data format 
     ENCFF819IDN_H3K4me3  ENCFF819IDN H3K4me3    Data format 
     ENCFF822FOA_microRNA-seq  ENCFF822FOA microRNA-seq    Data format 
     ENCFF825UDG_H3K36me3  ENCFF825UDG H3K36me3    Data format 
     ENCFF832CMU_H3K36me3  ENCFF832CMU H3K36me3    Data format 
     ENCFF833GPK_H3K4me1  ENCFF833GPK H3K4me1    Data format 
     ENCFF840COR_H3K4me1  ENCFF840COR H3K4me1    Data format 
     ENCFF840OLR_microRNA-seq  ENCFF840OLR microRNA-seq    Data format 
     ENCFF845AAI_H3K36me3  ENCFF845AAI H3K36me3    Data format 
     ENCFF846SFT_H3K4me3  ENCFF846SFT H3K4me3    Data format 
     ENCFF848DAV_H3K27ac  ENCFF848DAV H3K27ac    Data format 
     ENCFF849LAF_H3K36me3  ENCFF849LAF H3K36me3    Data format 
     ENCFF850MBS_microRNA-seq  ENCFF850MBS microRNA-seq    Data format 
     ENCFF876EXE_H3K9me3  ENCFF876EXE H3K9me3    Data format 
     ENCFF886TEW_H3K4me1  ENCFF886TEW H3K4me1    Data format 
     ENCFF894YHR_H3K9ac  ENCFF894YHR H3K9ac    Data format 
     ENCFF910FZX_DNase-seq  ENCFF910FZX DNase-seq    Data format 
     ENCFF913DRM_H3K4me1  ENCFF913DRM H3K4me1    Data format 
     ENCFF913FVO_H3K27me3  ENCFF913FVO H3K27me3    Data format 
     ENCFF913XWL_H3K27me3  ENCFF913XWL H3K27me3    Data format 
     ENCFF989ANO_H3K36me3  ENCFF989ANO H3K36me3    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:plus_strand_signal_of_all_reads
Sample:foreskin_keratinocyte
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF