Sample Summary germinal_matrix Summary Track Settings
 
Roadmap Epigenome germinal_matrix Summary

Track collection: Sample Summary

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     ENCFF042GLM_H3K36me3  ENCFF042GLM H3K36me3    Data format 
     ENCFF051QIL_H3K4me3  ENCFF051QIL H3K4me3    Data format 
     ENCFF065ESF_polyA_plus_RNA-seq  ENCFF065ESF polyA_plus_RNA-seq    Data format 
     ENCFF080IBB_microRNA-seq  ENCFF080IBB microRNA-seq    Data format 
     ENCFF082PKW_H3K36me3  ENCFF082PKW H3K36me3    Data format 
     ENCFF104LHX_H3K4me3  ENCFF104LHX H3K4me3    Data format 
     ENCFF106QFD_H3K36me3  ENCFF106QFD H3K36me3    Data format 
     ENCFF107XHS_H3K27me3  ENCFF107XHS H3K27me3    Data format 
     ENCFF122QLT_H3K36me3  ENCFF122QLT H3K36me3    Data format 
     ENCFF170ULS_H3K9me3  ENCFF170ULS H3K9me3    Data format 
     ENCFF175NAT_H3K4me1  ENCFF175NAT H3K4me1    Data format 
     ENCFF180EPR_microRNA-seq  ENCFF180EPR microRNA-seq    Data format 
     ENCFF181TIV_H3K9me3  ENCFF181TIV H3K9me3    Data format 
     ENCFF184SKY_H3K27me3  ENCFF184SKY H3K27me3    Data format 
     ENCFF202CVA_H3K4me3  ENCFF202CVA H3K4me3    Data format 
     ENCFF215IDC_H3K4me1  ENCFF215IDC H3K4me1    Data format 
     ENCFF234TIE_H3K9me3  ENCFF234TIE H3K9me3    Data format 
     ENCFF326DNH_H3K27me3  ENCFF326DNH H3K27me3    Data format 
     ENCFF337KKY_H3K36me3  ENCFF337KKY H3K36me3    Data format 
     ENCFF445WRM_microRNA-seq  ENCFF445WRM microRNA-seq    Data format 
     ENCFF448QRY_polyA_plus_RNA-seq  ENCFF448QRY polyA_plus_RNA-seq    Data format 
     ENCFF489SUO_H3K27me3  ENCFF489SUO H3K27me3    Data format 
     ENCFF493AHV_H3K36me3  ENCFF493AHV H3K36me3    Data format 
     ENCFF514MOH_microRNA-seq  ENCFF514MOH microRNA-seq    Data format 
     ENCFF516ZKE_H3K36me3  ENCFF516ZKE H3K36me3    Data format 
     ENCFF541FUB_H3K27me3  ENCFF541FUB H3K27me3    Data format 
     ENCFF546ZPK_polyA_plus_RNA-seq  ENCFF546ZPK polyA_plus_RNA-seq    Data format 
     ENCFF550KKI_H3K4me3  ENCFF550KKI H3K4me3    Data format 
     ENCFF552EJN_H3K27me3  ENCFF552EJN H3K27me3    Data format 
     ENCFF578GEC_H3K9me3  ENCFF578GEC H3K9me3    Data format 
     ENCFF589PYF_microRNA-seq  ENCFF589PYF microRNA-seq    Data format 
     ENCFF589YAH_microRNA-seq  ENCFF589YAH microRNA-seq    Data format 
     ENCFF602LWS_microRNA-seq  ENCFF602LWS microRNA-seq    Data format 
     ENCFF613TQN_microRNA-seq  ENCFF613TQN microRNA-seq    Data format 
     ENCFF647ZKH_H3K4me1  ENCFF647ZKH H3K4me1    Data format 
     ENCFF663VPI_H3K4me1  ENCFF663VPI H3K4me1    Data format 
     ENCFF666IYO_H3K36me3  ENCFF666IYO H3K36me3    Data format 
     ENCFF670WSX_H3K4me1  ENCFF670WSX H3K4me1    Data format 
     ENCFF719JDX_microRNA-seq  ENCFF719JDX microRNA-seq    Data format 
     ENCFF720MFS_H3K9me3  ENCFF720MFS H3K9me3    Data format 
     ENCFF722AGE_microRNA-seq  ENCFF722AGE microRNA-seq    Data format 
     ENCFF731KVE_H3K4me3  ENCFF731KVE H3K4me3    Data format 
     ENCFF749JXZ_microRNA-seq  ENCFF749JXZ microRNA-seq    Data format 
     ENCFF783YYN_H3K9me3  ENCFF783YYN H3K9me3    Data format 
     ENCFF786QHF_H3K4me3  ENCFF786QHF H3K4me3    Data format 
     ENCFF787EIU_H3K27me3  ENCFF787EIU H3K27me3    Data format 
     ENCFF801CGC_microRNA-seq  ENCFF801CGC microRNA-seq    Data format 
     ENCFF811YIS_H3K4me3  ENCFF811YIS H3K4me3    Data format 
     ENCFF847IWJ_H3K4me1  ENCFF847IWJ H3K4me1    Data format 
     ENCFF862QSU_H3K9me3  ENCFF862QSU H3K9me3    Data format 
     ENCFF866ACH_H3K27me3  ENCFF866ACH H3K27me3    Data format 
     ENCFF889IYK_H3K4me1  ENCFF889IYK H3K4me1    Data format 
     ENCFF984NUR_H3K4me1  ENCFF984NUR H3K4me1    Data format 
     ENCFF988XYF_H3K4me3  ENCFF988XYF H3K4me3    Data format 
     ENCFF998IVF_H3K9me3  ENCFF998IVF H3K9me3    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:plus_strand_signal_of_all_reads
Sample:foreskin_melanocyte
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF