Sample Summary iPS-15b Summary Track Settings
 
Roadmap Epigenome iPS-15b Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
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Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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     ENCFF013ROD_H3K9me3  ENCFF013ROD H3K9me3    Data format 
     ENCFF183TKL_H3K27me3  ENCFF183TKL H3K27me3    Data format 
     ENCFF215AYX_H3K9me3  ENCFF215AYX H3K9me3    Data format 
     ENCFF220ICM_H3K9me3  ENCFF220ICM H3K9me3    Data format 
     ENCFF227SWT_H3K36me3  ENCFF227SWT H3K36me3    Data format 
     ENCFF261RPA_H3K4me3  ENCFF261RPA H3K4me3    Data format 
     ENCFF287QXW_H3K36me3  ENCFF287QXW H3K36me3    Data format 
     ENCFF304ECU_H3K9ac  ENCFF304ECU H3K9ac    Data format 
     ENCFF316EML_H3K4me3  ENCFF316EML H3K4me3    Data format 
     ENCFF383KZH_H3K36me3  ENCFF383KZH H3K36me3    Data format 
     ENCFF419AJY_H3K4me1  ENCFF419AJY H3K4me1    Data format 
     ENCFF437YBP_H3K4me1  ENCFF437YBP H3K4me1    Data format 
     ENCFF440NAI_H3K9ac  ENCFF440NAI H3K9ac    Data format 
     ENCFF467BXL_H3K27me3  ENCFF467BXL H3K27me3    Data format 
     ENCFF483JCG_H3K36me3  ENCFF483JCG H3K36me3    Data format 
     ENCFF508GQA_H3K4me1  ENCFF508GQA H3K4me1    Data format 
     ENCFF555ESM_H3K9ac  ENCFF555ESM H3K9ac    Data format 
     ENCFF744XNM_H3K27me3  ENCFF744XNM H3K27me3    Data format 
     ENCFF752CDU_H3K4me3  ENCFF752CDU H3K4me3    Data format 
     ENCFF838FGF_H3K9me3  ENCFF838FGF H3K9me3    Data format 
     ENCFF863AZV_H3K4me1  ENCFF863AZV H3K4me1    Data format 
     ENCFF932VPE_H3K4me3  ENCFF932VPE H3K4me3    Data format 
     ENCFF951EOY_H3K9ac  ENCFF951EOY H3K9ac    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:signal_p-value
Sample:iPS-11a
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF