Sample Summary iPS-18a Summary Track Settings
 
Roadmap Epigenome iPS-18a Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
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Draw y indicator lines:at y = 0.0:    at y =
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     ENCFF064SWK_H3K4me3  ENCFF064SWK H3K4me3    Data format 
     ENCFF065MWJ_H3K36me3  ENCFF065MWJ H3K36me3    Data format 
     ENCFF071JJT_H3K27ac  ENCFF071JJT H3K27ac    Data format 
     ENCFF096GLC_H3K4me3  ENCFF096GLC H3K4me3    Data format 
     ENCFF109EWL_H3K27ac  ENCFF109EWL H3K27ac    Data format 
     ENCFF157YXJ_H3K4me1  ENCFF157YXJ H3K4me1    Data format 
     ENCFF236MRU_H3K27ac  ENCFF236MRU H3K27ac    Data format 
     ENCFF309FWG_H3K27me3  ENCFF309FWG H3K27me3    Data format 
     ENCFF324CCJ_H3K4me1  ENCFF324CCJ H3K4me1    Data format 
     ENCFF337CWF_H3K9me3  ENCFF337CWF H3K9me3    Data format 
     ENCFF424RJL_H3K4me3  ENCFF424RJL H3K4me3    Data format 
     ENCFF465PQM_H3K4me1  ENCFF465PQM H3K4me1    Data format 
     ENCFF546UVP_H3K36me3  ENCFF546UVP H3K36me3    Data format 
     ENCFF547RRP_H3K9ac  ENCFF547RRP H3K9ac    Data format 
     ENCFF584WFQ_H3K4me1  ENCFF584WFQ H3K4me1    Data format 
     ENCFF641SWX_H3K9ac  ENCFF641SWX H3K9ac    Data format 
     ENCFF646XDM_H3K27me3  ENCFF646XDM H3K27me3    Data format 
     ENCFF655PBT_H3K27me3  ENCFF655PBT H3K27me3    Data format 
     ENCFF674RNX_H3K36me3  ENCFF674RNX H3K36me3    Data format 
     ENCFF710UFE_H3K4me3  ENCFF710UFE H3K4me3    Data format 
     ENCFF733OJY_H3K9me3  ENCFF733OJY H3K9me3    Data format 
     ENCFF817HZX_H3K27ac  ENCFF817HZX H3K27ac    Data format 
     ENCFF822AOM_H3K9ac  ENCFF822AOM H3K9ac    Data format 
     ENCFF870IRT_H3K9me3  ENCFF870IRT H3K9me3    Data format 
     ENCFF887AKX_H3K9ac  ENCFF887AKX H3K9ac    Data format 
     ENCFF903RPL_H3K9me3  ENCFF903RPL H3K9me3    Data format 
     ENCFF969VZS_H3K27me3  ENCFF969VZS H3K27me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:iPS-15b
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF