Sample Summary iPS-18c Summary Track Settings
 
Roadmap Epigenome iPS-18c Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Track height: pixels (range: 16 to 64)
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     ENCFF047TKY_H3K9me3  ENCFF047TKY H3K9me3    Data format 
     ENCFF147ZRD_H3K4me3  ENCFF147ZRD H3K4me3    Data format 
     ENCFF166LNF_H3K4me3  ENCFF166LNF H3K4me3    Data format 
     ENCFF241OZD_H3K4me3  ENCFF241OZD H3K4me3    Data format 
     ENCFF253WYR_H3K4me3  ENCFF253WYR H3K4me3    Data format 
     ENCFF261IKQ_H3K4me3  ENCFF261IKQ H3K4me3    Data format 
     ENCFF415POW_H3K4me3  ENCFF415POW H3K4me3    Data format 
     ENCFF427AOU_H3K4me3  ENCFF427AOU H3K4me3    Data format 
     ENCFF549KHL_H3K4me3  ENCFF549KHL H3K4me3    Data format 
     ENCFF562LWC_H3K4me3  ENCFF562LWC H3K4me3    Data format 
     ENCFF573TZO_H3K4me3  ENCFF573TZO H3K4me3    Data format 
     ENCFF575LWQ_H3K9me3  ENCFF575LWQ H3K9me3    Data format 
     ENCFF681HVI_H3K4me3  ENCFF681HVI H3K4me3    Data format 
     ENCFF711MPU_H3K9me3  ENCFF711MPU H3K9me3    Data format 
     ENCFF739MDN_H3K9me3  ENCFF739MDN H3K9me3    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:iPS-18a
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF