Sample Summary iPS-20b Summary Track Settings
 
Roadmap Epigenome iPS-20b Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
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     ENCFF005PGA_H3K9ac  ENCFF005PGA H3K9ac    Data format 
     ENCFF022PQI_H3K36me3  ENCFF022PQI H3K36me3    Data format 
     ENCFF028YUQ_H3K9ac  ENCFF028YUQ H3K9ac    Data format 
     ENCFF046VEE_H3K36me3  ENCFF046VEE H3K36me3    Data format 
     ENCFF048GFE_H3K4me1  ENCFF048GFE H3K4me1    Data format 
     ENCFF059TXF_H3K27me3  ENCFF059TXF H3K27me3    Data format 
     ENCFF087AOE_H3K4me1  ENCFF087AOE H3K4me1    Data format 
     ENCFF095DEK_H3K9ac  ENCFF095DEK H3K9ac    Data format 
     ENCFF098EXW_H3K36me3  ENCFF098EXW H3K36me3    Data format 
     ENCFF106FEK_H3K27me3  ENCFF106FEK H3K27me3    Data format 
     ENCFF117QYX_H3K4me3  ENCFF117QYX H3K4me3    Data format 
     ENCFF124UBO_H3K4me1  ENCFF124UBO H3K4me1    Data format 
     ENCFF126SJO_H3K27me3  ENCFF126SJO H3K27me3    Data format 
     ENCFF130NOQ_H3K9ac  ENCFF130NOQ H3K9ac    Data format 
     ENCFF131UMJ_H3K36me3  ENCFF131UMJ H3K36me3    Data format 
     ENCFF143LJD_H3K9me3  ENCFF143LJD H3K9me3    Data format 
     ENCFF161BKJ_H3K9me3  ENCFF161BKJ H3K9me3    Data format 
     ENCFF166XBQ_H3K27me3  ENCFF166XBQ H3K27me3    Data format 
     ENCFF173DKQ_H3K9ac  ENCFF173DKQ H3K9ac    Data format 
     ENCFF180HUG_H3K36me3  ENCFF180HUG H3K36me3    Data format 
     ENCFF183XBP_H3K9ac  ENCFF183XBP H3K9ac    Data format 
     ENCFF194DXL_H3K27me3  ENCFF194DXL H3K27me3    Data format 
     ENCFF229NSY_H3K9me3  ENCFF229NSY H3K9me3    Data format 
     ENCFF256DMA_H3K4me3  ENCFF256DMA H3K4me3    Data format 
     ENCFF275ZAC_H3K27ac  ENCFF275ZAC H3K27ac    Data format 
     ENCFF298FZV_H3K4me1  ENCFF298FZV H3K4me1    Data format 
     ENCFF303LPE_H3K4me3  ENCFF303LPE H3K4me3    Data format 
     ENCFF318FKM_H3K36me3  ENCFF318FKM H3K36me3    Data format 
     ENCFF348WMT_H3K4me3  ENCFF348WMT H3K4me3    Data format 
     ENCFF355MOE_H3K36me3  ENCFF355MOE H3K36me3    Data format 
     ENCFF357WXA_H3K27me3  ENCFF357WXA H3K27me3    Data format 
     ENCFF361ZVO_H3K9me3  ENCFF361ZVO H3K9me3    Data format 
     ENCFF365GAF_H3K36me3  ENCFF365GAF H3K36me3    Data format 
     ENCFF368ENS_H3K36me3  ENCFF368ENS H3K36me3    Data format 
     ENCFF370WLV_H3K9me3  ENCFF370WLV H3K9me3    Data format 
     ENCFF377NYG_H3K9me3  ENCFF377NYG H3K9me3    Data format 
     ENCFF396NVK_H3K9me3  ENCFF396NVK H3K9me3    Data format 
     ENCFF407HLV_H3K9me3  ENCFF407HLV H3K9me3    Data format 
     ENCFF450PBY_H3K27me3  ENCFF450PBY H3K27me3    Data format 
     ENCFF458MYF_H3K4me3  ENCFF458MYF H3K4me3    Data format 
     ENCFF483DAZ_H3K4me3  ENCFF483DAZ H3K4me3    Data format 
     ENCFF487UYF_H3K9me3  ENCFF487UYF H3K9me3    Data format 
     ENCFF488TCF_H3K4me3  ENCFF488TCF H3K4me3    Data format 
     ENCFF489YBJ_H3K36me3  ENCFF489YBJ H3K36me3    Data format 
     ENCFF523AAP_H3K36me3  ENCFF523AAP H3K36me3    Data format 
     ENCFF530NNI_H3K27me3  ENCFF530NNI H3K27me3    Data format 
     ENCFF545ONK_H3K4me3  ENCFF545ONK H3K4me3    Data format 
     ENCFF553RGT_H3K4me1  ENCFF553RGT H3K4me1    Data format 
     ENCFF579IGZ_H3K9me3  ENCFF579IGZ H3K9me3    Data format 
     ENCFF600NDY_H3K4me3  ENCFF600NDY H3K4me3    Data format 
     ENCFF623CDM_H3K9ac  ENCFF623CDM H3K9ac    Data format 
     ENCFF655UAH_H3K9ac  ENCFF655UAH H3K9ac    Data format 
     ENCFF656YZF_H3K9me3  ENCFF656YZF H3K9me3    Data format 
     ENCFF660QOJ_H3K9ac  ENCFF660QOJ H3K9ac    Data format 
     ENCFF661BET_H3K27ac  ENCFF661BET H3K27ac    Data format 
     ENCFF675UPZ_H3K36me3  ENCFF675UPZ H3K36me3    Data format 
     ENCFF680MFN_H3K4me1  ENCFF680MFN H3K4me1    Data format 
     ENCFF703VST_H3K27ac  ENCFF703VST H3K27ac    Data format 
     ENCFF719IZI_H3K27me3  ENCFF719IZI H3K27me3    Data format 
     ENCFF734MUI_H3K4me1  ENCFF734MUI H3K4me1    Data format 
     ENCFF738QTR_H3K4me3  ENCFF738QTR H3K4me3    Data format 
     ENCFF777YHR_H3K27me3  ENCFF777YHR H3K27me3    Data format 
     ENCFF784QYR_H3K4me1  ENCFF784QYR H3K4me1    Data format 
     ENCFF795ULI_H3K27me3  ENCFF795ULI H3K27me3    Data format 
     ENCFF805MBF_H3K9ac  ENCFF805MBF H3K9ac    Data format 
     ENCFF820HWN_H3K4me1  ENCFF820HWN H3K4me1    Data format 
     ENCFF821VDY_H3K27ac  ENCFF821VDY H3K27ac    Data format 
     ENCFF822AKT_H3K9me3  ENCFF822AKT H3K9me3    Data format 
     ENCFF826TDU_H3K4me1  ENCFF826TDU H3K4me1    Data format 
     ENCFF874TWD_H3K9ac  ENCFF874TWD H3K9ac    Data format 
     ENCFF912DFD_H3K4me3  ENCFF912DFD H3K4me3    Data format 
     ENCFF925KNS_H3K4me1  ENCFF925KNS H3K4me1    Data format 
     ENCFF953CHF_H3K4me3  ENCFF953CHF H3K4me3    Data format 
     ENCFF957ZBA_H3K9ac  ENCFF957ZBA H3K9ac    Data format 
     ENCFF963XIW_H3K4me1  ENCFF963XIW H3K4me1    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:iPS-18c
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF