Sample Summary kidney Summary Track Settings
 
Roadmap Epigenome kidney Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

Display mode:       Reset to defaults

Overlay method:
Type of graph:
Track height: pixels (range: 16 to 64)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 30)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
All subtracks:
List subtracks: only selected/visible    all    ()  
     ENCFF002YGN_polyA_plus_RNA-seq  ENCFF002YGN polyA_plus_RNA-seq    Data format 
     ENCFF005OBL_H3K9ac  ENCFF005OBL H3K9ac    Data format 
     ENCFF012GTV_H3K4me1  ENCFF012GTV H3K4me1    Data format 
     ENCFF012XEU_H3K9me3  ENCFF012XEU H3K9me3    Data format 
     ENCFF016QHF_polyA_plus_RNA-seq  ENCFF016QHF polyA_plus_RNA-seq    Data format 
     ENCFF018GLG_H3K4me1  ENCFF018GLG H3K4me1    Data format 
     ENCFF018PUY_H3K9ac  ENCFF018PUY H3K9ac    Data format 
     ENCFF042ZOW_H3K36me3  ENCFF042ZOW H3K36me3    Data format 
     ENCFF061ISH_polyA_plus_RNA-seq  ENCFF061ISH polyA_plus_RNA-seq    Data format 
     ENCFF064TTU_polyA_plus_RNA-seq  ENCFF064TTU polyA_plus_RNA-seq    Data format 
     ENCFF076DVZ_H3K4me1  ENCFF076DVZ H3K4me1    Data format 
     ENCFF082CDZ_H3K9me3  ENCFF082CDZ H3K9me3    Data format 
     ENCFF086QNW_H3K9ac  ENCFF086QNW H3K9ac    Data format 
     ENCFF092VSV_H3K27ac  ENCFF092VSV H3K27ac    Data format 
     ENCFF098CIC_DNase-seq  ENCFF098CIC DNase-seq    Data format 
     ENCFF107THY_H3K36me3  ENCFF107THY H3K36me3    Data format 
     ENCFF119ZJT_H3K4me1  ENCFF119ZJT H3K4me1    Data format 
     ENCFF130NNZ_H3K9me3  ENCFF130NNZ H3K9me3    Data format 
     ENCFF135FMF_H3K9me3  ENCFF135FMF H3K9me3    Data format 
     ENCFF138ZXZ_polyA_plus_RNA-seq  ENCFF138ZXZ polyA_plus_RNA-seq    Data format 
     ENCFF141ZUP_H3K9me3  ENCFF141ZUP H3K9me3    Data format 
     ENCFF143EWZ_polyA_plus_RNA-seq  ENCFF143EWZ polyA_plus_RNA-seq    Data format 
     ENCFF154YUA_H3K9ac  ENCFF154YUA H3K9ac    Data format 
     ENCFF168RPD_polyA_plus_RNA-seq  ENCFF168RPD polyA_plus_RNA-seq    Data format 
     ENCFF184QPT_DNase-seq  ENCFF184QPT DNase-seq    Data format 
     ENCFF191CJN_H3K36me3  ENCFF191CJN H3K36me3    Data format 
     ENCFF192KLJ_DNase-seq  ENCFF192KLJ DNase-seq    Data format 
     ENCFF198TWQ_H3K9me3  ENCFF198TWQ H3K9me3    Data format 
     ENCFF206NNF_H3K9ac  ENCFF206NNF H3K9ac    Data format 
     ENCFF207ECZ_DNase-seq  ENCFF207ECZ DNase-seq    Data format 
     ENCFF237XUE_H3K9ac  ENCFF237XUE H3K9ac    Data format 
     ENCFF270KWP_DNase-seq  ENCFF270KWP DNase-seq    Data format 
     ENCFF285VAE_H3K36me3  ENCFF285VAE H3K36me3    Data format 
     ENCFF295FFW_polyA_plus_RNA-seq  ENCFF295FFW polyA_plus_RNA-seq    Data format 
     ENCFF313QRX_H3K4me1  ENCFF313QRX H3K4me1    Data format 
     ENCFF315KPL_H3K9ac  ENCFF315KPL H3K9ac    Data format 
     ENCFF326UJT_H3K9ac  ENCFF326UJT H3K9ac    Data format 
     ENCFF333SUU_polyA_plus_RNA-seq  ENCFF333SUU polyA_plus_RNA-seq    Data format 
     ENCFF336QBY_H3K4me1  ENCFF336QBY H3K4me1    Data format 
     ENCFF344RCN_H3K9me3  ENCFF344RCN H3K9me3    Data format 
     ENCFF354FYC_H3K27ac  ENCFF354FYC H3K27ac    Data format 
     ENCFF359CVG_polyA_plus_RNA-seq  ENCFF359CVG polyA_plus_RNA-seq    Data format 
     ENCFF369CRG_DNase-seq  ENCFF369CRG DNase-seq    Data format 
     ENCFF369QLG_H3K4me3  ENCFF369QLG H3K4me3    Data format 
     ENCFF382KQK_H3K9me3  ENCFF382KQK H3K9me3    Data format 
     ENCFF384SVX_H3K36me3  ENCFF384SVX H3K36me3    Data format 
     ENCFF405KAZ_H3K9ac  ENCFF405KAZ H3K9ac    Data format 
     ENCFF408FAL_H3K4me1  ENCFF408FAL H3K4me1    Data format 
     ENCFF416WIU_H3K27me3  ENCFF416WIU H3K27me3    Data format 
     ENCFF433YLK_DNase-seq  ENCFF433YLK DNase-seq    Data format 
     ENCFF438RHT_H3K4me3  ENCFF438RHT H3K4me3    Data format 
     ENCFF449COI_H3K9me3  ENCFF449COI H3K9me3    Data format 
     ENCFF452WXQ_H3K9me3  ENCFF452WXQ H3K9me3    Data format 
     ENCFF453NOK_H3K4me1  ENCFF453NOK H3K4me1    Data format 
     ENCFF477UKT_H3K9me3  ENCFF477UKT H3K9me3    Data format 
     ENCFF480XFJ_H3K4me3  ENCFF480XFJ H3K4me3    Data format 
     ENCFF486AVO_H3K4me3  ENCFF486AVO H3K4me3    Data format 
     ENCFF490IDX_DNase-seq  ENCFF490IDX DNase-seq    Data format 
     ENCFF493NDW_H3K4me3  ENCFF493NDW H3K4me3    Data format 
     ENCFF499ZEJ_H3K27ac  ENCFF499ZEJ H3K27ac    Data format 
     ENCFF508BZB_H3K36me3  ENCFF508BZB H3K36me3    Data format 
     ENCFF518IQW_DNase-seq  ENCFF518IQW DNase-seq    Data format 
     ENCFF520OKH_polyA_plus_RNA-seq  ENCFF520OKH polyA_plus_RNA-seq    Data format 
     ENCFF534ECB_H3K4me1  ENCFF534ECB H3K4me1    Data format 
     ENCFF537OFZ_H3K36me3  ENCFF537OFZ H3K36me3    Data format 
     ENCFF547ICI_DNase-seq  ENCFF547ICI DNase-seq    Data format 
     ENCFF552KVC_H3K4me3  ENCFF552KVC H3K4me3    Data format 
     ENCFF554WCY_polyA_plus_RNA-seq  ENCFF554WCY polyA_plus_RNA-seq    Data format 
     ENCFF557YAB_DNase-seq  ENCFF557YAB DNase-seq    Data format 
     ENCFF582XBN_DNase-seq  ENCFF582XBN DNase-seq    Data format 
     ENCFF592MFL_H3K4me1  ENCFF592MFL H3K4me1    Data format 
     ENCFF592YMZ_polyA_plus_RNA-seq  ENCFF592YMZ polyA_plus_RNA-seq    Data format 
     ENCFF610KSC_H3K36me3  ENCFF610KSC H3K36me3    Data format 
     ENCFF652DMW_H3K4me1  ENCFF652DMW H3K4me1    Data format 
     ENCFF656BUX_H3K9ac  ENCFF656BUX H3K9ac    Data format 
     ENCFF675EXW_H3K36me3  ENCFF675EXW H3K36me3    Data format 
     ENCFF717VNW_polyA_plus_RNA-seq  ENCFF717VNW polyA_plus_RNA-seq    Data format 
     ENCFF722YGU_H3K27ac  ENCFF722YGU H3K27ac    Data format 
     ENCFF728NXJ_polyA_plus_RNA-seq  ENCFF728NXJ polyA_plus_RNA-seq    Data format 
     ENCFF729ZPF_H3K4me3  ENCFF729ZPF H3K4me3    Data format 
     ENCFF737RAB_H3K27me3  ENCFF737RAB H3K27me3    Data format 
     ENCFF740DGO_DNase-seq  ENCFF740DGO DNase-seq    Data format 
     ENCFF740RYA_H3K27me3  ENCFF740RYA H3K27me3    Data format 
     ENCFF758ZBZ_DNase-seq  ENCFF758ZBZ DNase-seq    Data format 
     ENCFF782MNA_DNase-seq  ENCFF782MNA DNase-seq    Data format 
     ENCFF793ZSS_DNase-seq  ENCFF793ZSS DNase-seq    Data format 
     ENCFF801AYM_H3K9me3  ENCFF801AYM H3K9me3    Data format 
     ENCFF803HAQ_H3K27me3  ENCFF803HAQ H3K27me3    Data format 
     ENCFF829DEJ_H3K27ac  ENCFF829DEJ H3K27ac    Data format 
     ENCFF839HMN_H3K27ac  ENCFF839HMN H3K27ac    Data format 
     ENCFF848WUI_H3K36me3  ENCFF848WUI H3K36me3    Data format 
     ENCFF871QBB_H3K27ac  ENCFF871QBB H3K27ac    Data format 
     ENCFF871RSM_DNase-seq  ENCFF871RSM DNase-seq    Data format 
     ENCFF890HSZ_DNase-seq  ENCFF890HSZ DNase-seq    Data format 
     ENCFF890MUZ_H3K4me3  ENCFF890MUZ H3K4me3    Data format 
     ENCFF893NPK_H3K9ac  ENCFF893NPK H3K9ac    Data format 
     ENCFF894KXX_H3K9ac  ENCFF894KXX H3K9ac    Data format 
     ENCFF900IZB_H3K36me3  ENCFF900IZB H3K36me3    Data format 
     ENCFF929KNV_H3K4me3  ENCFF929KNV H3K4me3    Data format 
     ENCFF932VQG_DNase-seq  ENCFF932VQG DNase-seq    Data format 
     ENCFF954YGS_DNase-seq  ENCFF954YGS DNase-seq    Data format 
     ENCFF955ECD_H3K4me3  ENCFF955ECD H3K4me3    Data format 
     ENCFF969UJW_DNase-seq  ENCFF969UJW DNase-seq    Data format 
     ENCFF973MEJ_H3K27ac  ENCFF973MEJ H3K27ac    Data format 
     ENCFF978ZRB_H3K36me3  ENCFF978ZRB H3K36me3    Data format 
     ENCFF992BPB_H3K4me1  ENCFF992BPB H3K4me1    Data format 
     ENCFF996ZCU_DNase-seq  ENCFF996ZCU DNase-seq    Data format 
    
Metadata:
Assay:ChIP-seq
OutputType:fold_change_over_control
Sample:iPS-20b
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF