Sample Summary large_intestine Summary Track Settings
 
Roadmap Epigenome large_intestine Summary

Track collection: Sample Summary

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All subtracks:
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     ENCFF024LQJ_H3K4me3  ENCFF024LQJ H3K4me3    Data format 
     ENCFF029HCR_polyA_plus_RNA-seq  ENCFF029HCR polyA_plus_RNA-seq    Data format 
     ENCFF042RIC_H3K36me3  ENCFF042RIC H3K36me3    Data format 
     ENCFF048QNC_polyA_plus_RNA-seq  ENCFF048QNC polyA_plus_RNA-seq    Data format 
     ENCFF079EYI_H3K27me3  ENCFF079EYI H3K27me3    Data format 
     ENCFF079LOE_DNase-seq  ENCFF079LOE DNase-seq    Data format 
     ENCFF093WAF_H3K36me3  ENCFF093WAF H3K36me3    Data format 
     ENCFF099YCW_H3K36me3  ENCFF099YCW H3K36me3    Data format 
     ENCFF112GQO_DNase-seq  ENCFF112GQO DNase-seq    Data format 
     ENCFF115FJH_H3K27me3  ENCFF115FJH H3K27me3    Data format 
     ENCFF128UIM_H3K36me3  ENCFF128UIM H3K36me3    Data format 
     ENCFF129LAP_polyA_plus_RNA-seq  ENCFF129LAP polyA_plus_RNA-seq    Data format 
     ENCFF130HHC_H3K27me3  ENCFF130HHC H3K27me3    Data format 
     ENCFF143CCT_H3K27me3  ENCFF143CCT H3K27me3    Data format 
     ENCFF159ZHB_polyA_plus_RNA-seq  ENCFF159ZHB polyA_plus_RNA-seq    Data format 
     ENCFF175EFK_H3K9me3  ENCFF175EFK H3K9me3    Data format 
     ENCFF177LLX_H3K4me1  ENCFF177LLX H3K4me1    Data format 
     ENCFF180ZYJ_polyA_plus_RNA-seq  ENCFF180ZYJ polyA_plus_RNA-seq    Data format 
     ENCFF181AJE_DNase-seq  ENCFF181AJE DNase-seq    Data format 
     ENCFF182FRR_H3K27ac  ENCFF182FRR H3K27ac    Data format 
     ENCFF199GYV_H3K27ac  ENCFF199GYV H3K27ac    Data format 
     ENCFF207LXN_DNase-seq  ENCFF207LXN DNase-seq    Data format 
     ENCFF237MQW_H3K4me1  ENCFF237MQW H3K4me1    Data format 
     ENCFF245XIJ_DNase-seq  ENCFF245XIJ DNase-seq    Data format 
     ENCFF259EZH_polyA_plus_RNA-seq  ENCFF259EZH polyA_plus_RNA-seq    Data format 
     ENCFF276JCL_DNase-seq  ENCFF276JCL DNase-seq    Data format 
     ENCFF295JCA_polyA_plus_RNA-seq  ENCFF295JCA polyA_plus_RNA-seq    Data format 
     ENCFF298LTL_H3K4me3  ENCFF298LTL H3K4me3    Data format 
     ENCFF304TGP_DNase-seq  ENCFF304TGP DNase-seq    Data format 
     ENCFF327GXC_DNase-seq  ENCFF327GXC DNase-seq    Data format 
     ENCFF327YXU_polyA_plus_RNA-seq  ENCFF327YXU polyA_plus_RNA-seq    Data format 
     ENCFF330DTN_polyA_plus_RNA-seq  ENCFF330DTN polyA_plus_RNA-seq    Data format 
     ENCFF353SDH_H3K36me3  ENCFF353SDH H3K36me3    Data format 
     ENCFF354VHC_H3K4me1  ENCFF354VHC H3K4me1    Data format 
     ENCFF365LXQ_DNase-seq  ENCFF365LXQ DNase-seq    Data format 
     ENCFF367ZCY_DNase-seq  ENCFF367ZCY DNase-seq    Data format 
     ENCFF383VTV_polyA_plus_RNA-seq  ENCFF383VTV polyA_plus_RNA-seq    Data format 
     ENCFF386DNI_H3K27ac  ENCFF386DNI H3K27ac    Data format 
     ENCFF443KCU_DNase-seq  ENCFF443KCU DNase-seq    Data format 
     ENCFF444MUM_polyA_plus_RNA-seq  ENCFF444MUM polyA_plus_RNA-seq    Data format 
     ENCFF451GMR_DNase-seq  ENCFF451GMR DNase-seq    Data format 
     ENCFF459KCW_polyA_plus_RNA-seq  ENCFF459KCW polyA_plus_RNA-seq    Data format 
     ENCFF471TWL_DNase-seq  ENCFF471TWL DNase-seq    Data format 
     ENCFF480NTP_DNase-seq  ENCFF480NTP DNase-seq    Data format 
     ENCFF482DLD_H3K9me3  ENCFF482DLD H3K9me3    Data format 
     ENCFF484MWV_DNase-seq  ENCFF484MWV DNase-seq    Data format 
     ENCFF501IWZ_DNase-seq  ENCFF501IWZ DNase-seq    Data format 
     ENCFF529BXD_H3K27me3  ENCFF529BXD H3K27me3    Data format 
     ENCFF536GBJ_H3K9me3  ENCFF536GBJ H3K9me3    Data format 
     ENCFF539FKZ_H3K27me3  ENCFF539FKZ H3K27me3    Data format 
     ENCFF553QXG_H3K36me3  ENCFF553QXG H3K36me3    Data format 
     ENCFF561BQO_polyA_plus_RNA-seq  ENCFF561BQO polyA_plus_RNA-seq    Data format 
     ENCFF581BJL_polyA_plus_RNA-seq  ENCFF581BJL polyA_plus_RNA-seq    Data format 
     ENCFF584GYN_DNase-seq  ENCFF584GYN DNase-seq    Data format 
     ENCFF604EYK_polyA_plus_RNA-seq  ENCFF604EYK polyA_plus_RNA-seq    Data format 
     ENCFF624YYH_polyA_plus_RNA-seq  ENCFF624YYH polyA_plus_RNA-seq    Data format 
     ENCFF636SMU_H3K36me3  ENCFF636SMU H3K36me3    Data format 
     ENCFF639UPM_polyA_plus_RNA-seq  ENCFF639UPM polyA_plus_RNA-seq    Data format 
     ENCFF644UUT_DNase-seq  ENCFF644UUT DNase-seq    Data format 
     ENCFF658BNW_DNase-seq  ENCFF658BNW DNase-seq    Data format 
     ENCFF666GNI_H3K36me3  ENCFF666GNI H3K36me3    Data format 
     ENCFF674OLN_WGBS  ENCFF674OLN WGBS    Data format 
     ENCFF678ZGR_DNase-seq  ENCFF678ZGR DNase-seq    Data format 
     ENCFF682WWB_polyA_plus_RNA-seq  ENCFF682WWB polyA_plus_RNA-seq    Data format 
     ENCFF691QJR_DNase-seq  ENCFF691QJR DNase-seq    Data format 
     ENCFF700ODC_DNase-seq  ENCFF700ODC DNase-seq    Data format 
     ENCFF703IKQ_H3K27me3  ENCFF703IKQ H3K27me3    Data format 
     ENCFF727XNJ_H3K27me3  ENCFF727XNJ H3K27me3    Data format 
     ENCFF730YNM_polyA_plus_RNA-seq  ENCFF730YNM polyA_plus_RNA-seq    Data format 
     ENCFF732MXQ_polyA_plus_RNA-seq  ENCFF732MXQ polyA_plus_RNA-seq    Data format 
     ENCFF745RVI_H3K4me3  ENCFF745RVI H3K4me3    Data format 
     ENCFF751MAL_H3K36me3  ENCFF751MAL H3K36me3    Data format 
     ENCFF752IQA_H3K4me1  ENCFF752IQA H3K4me1    Data format 
     ENCFF761ZJC_DNase-seq  ENCFF761ZJC DNase-seq    Data format 
     ENCFF765RXY_polyA_plus_RNA-seq  ENCFF765RXY polyA_plus_RNA-seq    Data format 
     ENCFF766GDO_DNase-seq  ENCFF766GDO DNase-seq    Data format 
     ENCFF777YLF_polyA_plus_RNA-seq  ENCFF777YLF polyA_plus_RNA-seq    Data format 
     ENCFF800KDN_H3K36me3  ENCFF800KDN H3K36me3    Data format 
     ENCFF808NPC_H3K36me3  ENCFF808NPC H3K36me3    Data format 
     ENCFF811EUQ_DNase-seq  ENCFF811EUQ DNase-seq    Data format 
     ENCFF818TBD_H3K27me3  ENCFF818TBD H3K27me3    Data format 
     ENCFF824OUT_DNase-seq  ENCFF824OUT DNase-seq    Data format 
     ENCFF829KVL_polyA_plus_RNA-seq  ENCFF829KVL polyA_plus_RNA-seq    Data format 
     ENCFF839JMI_H3K4me3  ENCFF839JMI H3K4me3    Data format 
     ENCFF847VCY_WGBS  ENCFF847VCY WGBS    Data format 
     ENCFF851RBH_H3K27ac  ENCFF851RBH H3K27ac    Data format 
     ENCFF869ACZ_H3K36me3  ENCFF869ACZ H3K36me3    Data format 
     ENCFF882QWZ_H3K27me3  ENCFF882QWZ H3K27me3    Data format 
     ENCFF884NXL_polyA_plus_RNA-seq  ENCFF884NXL polyA_plus_RNA-seq    Data format 
     ENCFF891TLY_WGBS  ENCFF891TLY WGBS    Data format 
     ENCFF905FZR_H3K27me3  ENCFF905FZR H3K27me3    Data format 
     ENCFF932VPS_polyA_plus_RNA-seq  ENCFF932VPS polyA_plus_RNA-seq    Data format 
     ENCFF943LXJ_H3K9me3  ENCFF943LXJ H3K9me3    Data format 
     ENCFF946QQD_polyA_plus_RNA-seq  ENCFF946QQD polyA_plus_RNA-seq    Data format 
     ENCFF962BGP_polyA_plus_RNA-seq  ENCFF962BGP polyA_plus_RNA-seq    Data format 
     ENCFF966ALN_H3K27me3  ENCFF966ALN H3K27me3    Data format 
     ENCFF975DZN_polyA_plus_RNA-seq  ENCFF975DZN polyA_plus_RNA-seq    Data format 
     ENCFF988XLP_DNase-seq  ENCFF988XLP DNase-seq    Data format 
     ENCFF995LSG_DNase-seq  ENCFF995LSG DNase-seq    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:signal_of_unique_reads
Sample:kidney
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF