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Roadmap Epigenome layer_of_hippocampus Summary

Track collection: Sample Summary

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     ENCFF003IQI_H3K9ac  ENCFF003IQI H3K9ac    Data format 
     ENCFF055DWP_H3K27me3  ENCFF055DWP H3K27me3    Data format 
     ENCFF071TKZ_H3K27me3  ENCFF071TKZ H3K27me3    Data format 
     ENCFF076RXN_H3K4me1  ENCFF076RXN H3K4me1    Data format 
     ENCFF081GCW_H3K9ac  ENCFF081GCW H3K9ac    Data format 
     ENCFF088LVM_H3K36me3  ENCFF088LVM H3K36me3    Data format 
     ENCFF095QCF_H3K27ac  ENCFF095QCF H3K27ac    Data format 
     ENCFF109DUV_H3K27me3  ENCFF109DUV H3K27me3    Data format 
     ENCFF114PLO_H3K4me3  ENCFF114PLO H3K4me3    Data format 
     ENCFF119XWP_H3K36me3  ENCFF119XWP H3K36me3    Data format 
     ENCFF122TLP_H3K4me1  ENCFF122TLP H3K4me1    Data format 
     ENCFF166RME_H3K9me3  ENCFF166RME H3K9me3    Data format 
     ENCFF173DWY_polyA_plus_RNA-seq  ENCFF173DWY polyA_plus_RNA-seq    Data format 
     ENCFF174QUO_H3K36me3  ENCFF174QUO H3K36me3    Data format 
     ENCFF183CWI_H3K4me1  ENCFF183CWI H3K4me1    Data format 
     ENCFF193QMO_H3K4me3  ENCFF193QMO H3K4me3    Data format 
     ENCFF231KHQ_H3K4me3  ENCFF231KHQ H3K4me3    Data format 
     ENCFF239YLD_H3K4me1  ENCFF239YLD H3K4me1    Data format 
     ENCFF250PDX_H3K4me3  ENCFF250PDX H3K4me3    Data format 
     ENCFF255PTY_H3K36me3  ENCFF255PTY H3K36me3    Data format 
     ENCFF258MPY_H3K4me1  ENCFF258MPY H3K4me1    Data format 
     ENCFF270SIE_H3K36me3  ENCFF270SIE H3K36me3    Data format 
     ENCFF279WOL_H3K4me3  ENCFF279WOL H3K4me3    Data format 
     ENCFF308VMB_H3K27ac  ENCFF308VMB H3K27ac    Data format 
     ENCFF312ZCJ_H3K9me3  ENCFF312ZCJ H3K9me3    Data format 
     ENCFF344UTH_H3K36me3  ENCFF344UTH H3K36me3    Data format 
     ENCFF348PTZ_H3K9me3  ENCFF348PTZ H3K9me3    Data format 
     ENCFF366FNG_H3K4me3  ENCFF366FNG H3K4me3    Data format 
     ENCFF375ARJ_H3K27ac  ENCFF375ARJ H3K27ac    Data format 
     ENCFF403XAR_H3K27ac  ENCFF403XAR H3K27ac    Data format 
     ENCFF407KLN_H3K9me3  ENCFF407KLN H3K9me3    Data format 
     ENCFF433WFS_H3K9ac  ENCFF433WFS H3K9ac    Data format 
     ENCFF441IAJ_H3K27me3  ENCFF441IAJ H3K27me3    Data format 
     ENCFF449TQG_H3K4me3  ENCFF449TQG H3K4me3    Data format 
     ENCFF456OOL_H3K27ac  ENCFF456OOL H3K27ac    Data format 
     ENCFF465FOA_H3K27ac  ENCFF465FOA H3K27ac    Data format 
     ENCFF472YNZ_H3K27ac  ENCFF472YNZ H3K27ac    Data format 
     ENCFF488CWE_H3K27me3  ENCFF488CWE H3K27me3    Data format 
     ENCFF530ZZZ_H3K4me1  ENCFF530ZZZ H3K4me1    Data format 
     ENCFF531RSE_H3K4me1  ENCFF531RSE H3K4me1    Data format 
     ENCFF531UZT_H3K9me3  ENCFF531UZT H3K9me3    Data format 
     ENCFF564VOY_H3K27ac  ENCFF564VOY H3K27ac    Data format 
     ENCFF565ZIS_H3K36me3  ENCFF565ZIS H3K36me3    Data format 
     ENCFF578UND_H3K27ac  ENCFF578UND H3K27ac    Data format 
     ENCFF581YTN_H3K9me3  ENCFF581YTN H3K9me3    Data format 
     ENCFF605OIM_H3K4me3  ENCFF605OIM H3K4me3    Data format 
     ENCFF635WNA_H3K9me3  ENCFF635WNA H3K9me3    Data format 
     ENCFF644DJO_H3K27me3  ENCFF644DJO H3K27me3    Data format 
     ENCFF648NVI_H3K36me3  ENCFF648NVI H3K36me3    Data format 
     ENCFF653HPK_H3K9me3  ENCFF653HPK H3K9me3    Data format 
     ENCFF679IDD_H3K27me3  ENCFF679IDD H3K27me3    Data format 
     ENCFF679LJE_H3K27me3  ENCFF679LJE H3K27me3    Data format 
     ENCFF709UON_H3K9me3  ENCFF709UON H3K9me3    Data format 
     ENCFF711EWQ_H3K4me3  ENCFF711EWQ H3K4me3    Data format 
     ENCFF711UOT_H3K36me3  ENCFF711UOT H3K36me3    Data format 
     ENCFF730WMQ_H3K4me3  ENCFF730WMQ H3K4me3    Data format 
     ENCFF754IJD_H3K36me3  ENCFF754IJD H3K36me3    Data format 
     ENCFF754KDX_H3K4me3  ENCFF754KDX H3K4me3    Data format 
     ENCFF755HAU_H3K9me3  ENCFF755HAU H3K9me3    Data format 
     ENCFF769VXP_H3K4me1  ENCFF769VXP H3K4me1    Data format 
     ENCFF781QTC_H3K27me3  ENCFF781QTC H3K27me3    Data format 
     ENCFF784DSK_H3K27me3  ENCFF784DSK H3K27me3    Data format 
     ENCFF804FZZ_H3K9me3  ENCFF804FZZ H3K9me3    Data format 
     ENCFF818EXD_H3K27ac  ENCFF818EXD H3K27ac    Data format 
     ENCFF821UFH_H3K36me3  ENCFF821UFH H3K36me3    Data format 
     ENCFF823QLT_H3K9me3  ENCFF823QLT H3K9me3    Data format 
     ENCFF838MXD_H3K4me3  ENCFF838MXD H3K4me3    Data format 
     ENCFF842CAN_H3K36me3  ENCFF842CAN H3K36me3    Data format 
     ENCFF889WID_H3K4me1  ENCFF889WID H3K4me1    Data format 
     ENCFF909HXM_H3K4me1  ENCFF909HXM H3K4me1    Data format 
     ENCFF914JQY_H3K27ac  ENCFF914JQY H3K27ac    Data format 
     ENCFF920RBG_H3K9ac  ENCFF920RBG H3K9ac    Data format 
     ENCFF925OKG_H3K4me1  ENCFF925OKG H3K4me1    Data format 
     ENCFF927FZR_H3K27me3  ENCFF927FZR H3K27me3    Data format 
     ENCFF955MQX_H3K27ac  ENCFF955MQX H3K27ac    Data format 
     ENCFF967TET_H3K4me1  ENCFF967TET H3K4me1    Data format 
     ENCFF981JSZ_H3K27me3  ENCFF981JSZ H3K27me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:large_intestine
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF