Sample Summary left_kidney Summary Track Settings
 
Roadmap Epigenome left_kidney Summary

Track collection: Sample Summary

+  Description
+  All tracks in this collection (133)

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     ENCFF014GON_DNase-seq  ENCFF014GON DNase-seq    Data format 
     ENCFF028YSP_DNase-seq  ENCFF028YSP DNase-seq    Data format 
     ENCFF093OUT_polyA_plus_RNA-seq  ENCFF093OUT polyA_plus_RNA-seq    Data format 
     ENCFF149REN_DNase-seq  ENCFF149REN DNase-seq    Data format 
     ENCFF169YHJ_polyA_plus_RNA-seq  ENCFF169YHJ polyA_plus_RNA-seq    Data format 
     ENCFF285RMG_polyA_plus_RNA-seq  ENCFF285RMG polyA_plus_RNA-seq    Data format 
     ENCFF401OYD_DNase-seq  ENCFF401OYD DNase-seq    Data format 
     ENCFF415LNY_DNase-seq  ENCFF415LNY DNase-seq    Data format 
     ENCFF490DLI_DNase-seq  ENCFF490DLI DNase-seq    Data format 
     ENCFF532VZC_DNase-seq  ENCFF532VZC DNase-seq    Data format 
     ENCFF541UPO_DNase-seq  ENCFF541UPO DNase-seq    Data format 
     ENCFF623DPF_DNase-seq  ENCFF623DPF DNase-seq    Data format 
     ENCFF632IWJ_DNase-seq  ENCFF632IWJ DNase-seq    Data format 
     ENCFF799IDS_DNase-seq  ENCFF799IDS DNase-seq    Data format 
     ENCFF821MFF_DNase-seq  ENCFF821MFF DNase-seq    Data format 
     ENCFF925SLC_DNase-seq  ENCFF925SLC DNase-seq    Data format 
     ENCFF956ZRT_DNase-seq  ENCFF956ZRT DNase-seq    Data format 
     ENCFF963ION_DNase-seq  ENCFF963ION DNase-seq    Data format 
     ENCFF966VNH_DNase-seq  ENCFF966VNH DNase-seq    Data format 
    
Metadata:
Assay:DNase-seq
OutputType:read-depth_normalized_signal
Sample:iPS_DF_4.7
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF