Sample Summary left_lung Summary Track Settings
 
Roadmap Epigenome left_lung Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF002ZNX_DNase-seq  ENCFF002ZNX DNase-seq    Data format 
     ENCFF010TXA_DNase-seq  ENCFF010TXA DNase-seq    Data format 
     ENCFF051QLC_DNase-seq  ENCFF051QLC DNase-seq    Data format 
     ENCFF089GUP_polyA_plus_RNA-seq  ENCFF089GUP polyA_plus_RNA-seq    Data format 
     ENCFF095EDD_polyA_plus_RNA-seq  ENCFF095EDD polyA_plus_RNA-seq    Data format 
     ENCFF100GJM_DNase-seq  ENCFF100GJM DNase-seq    Data format 
     ENCFF106TCU_DNase-seq  ENCFF106TCU DNase-seq    Data format 
     ENCFF139XHT_polyA_plus_RNA-seq  ENCFF139XHT polyA_plus_RNA-seq    Data format 
     ENCFF149IUC_DNase-seq  ENCFF149IUC DNase-seq    Data format 
     ENCFF166FGD_polyA_plus_RNA-seq  ENCFF166FGD polyA_plus_RNA-seq    Data format 
     ENCFF169TOY_polyA_plus_RNA-seq  ENCFF169TOY polyA_plus_RNA-seq    Data format 
     ENCFF185TGB_polyA_plus_RNA-seq  ENCFF185TGB polyA_plus_RNA-seq    Data format 
     ENCFF188JUH_polyA_plus_RNA-seq  ENCFF188JUH polyA_plus_RNA-seq    Data format 
     ENCFF216TLU_DNase-seq  ENCFF216TLU DNase-seq    Data format 
     ENCFF226HHY_polyA_plus_RNA-seq  ENCFF226HHY polyA_plus_RNA-seq    Data format 
     ENCFF286GRJ_DNase-seq  ENCFF286GRJ DNase-seq    Data format 
     ENCFF344YFU_DNase-seq  ENCFF344YFU DNase-seq    Data format 
     ENCFF347LRJ_DNase-seq  ENCFF347LRJ DNase-seq    Data format 
     ENCFF381KAS_polyA_plus_RNA-seq  ENCFF381KAS polyA_plus_RNA-seq    Data format 
     ENCFF387SJN_polyA_plus_RNA-seq  ENCFF387SJN polyA_plus_RNA-seq    Data format 
     ENCFF411ZZJ_polyA_plus_RNA-seq  ENCFF411ZZJ polyA_plus_RNA-seq    Data format 
     ENCFF418MLZ_polyA_plus_RNA-seq  ENCFF418MLZ polyA_plus_RNA-seq    Data format 
     ENCFF426JDT_polyA_plus_RNA-seq  ENCFF426JDT polyA_plus_RNA-seq    Data format 
     ENCFF427YCR_DNase-seq  ENCFF427YCR DNase-seq    Data format 
     ENCFF453FRP_polyA_plus_RNA-seq  ENCFF453FRP polyA_plus_RNA-seq    Data format 
     ENCFF453XFY_DNase-seq  ENCFF453XFY DNase-seq    Data format 
     ENCFF457QEG_polyA_plus_RNA-seq  ENCFF457QEG polyA_plus_RNA-seq    Data format 
     ENCFF459LFA_DNase-seq  ENCFF459LFA DNase-seq    Data format 
     ENCFF501PHR_polyA_plus_RNA-seq  ENCFF501PHR polyA_plus_RNA-seq    Data format 
     ENCFF549BSX_DNase-seq  ENCFF549BSX DNase-seq    Data format 
     ENCFF551UCO_polyA_plus_RNA-seq  ENCFF551UCO polyA_plus_RNA-seq    Data format 
     ENCFF576SBL_DNase-seq  ENCFF576SBL DNase-seq    Data format 
     ENCFF609SYX_DNase-seq  ENCFF609SYX DNase-seq    Data format 
     ENCFF636WJT_DNase-seq  ENCFF636WJT DNase-seq    Data format 
     ENCFF648RBX_polyA_plus_RNA-seq  ENCFF648RBX polyA_plus_RNA-seq    Data format 
     ENCFF655RAK_DNase-seq  ENCFF655RAK DNase-seq    Data format 
     ENCFF703UBP_DNase-seq  ENCFF703UBP DNase-seq    Data format 
     ENCFF735QXG_DNase-seq  ENCFF735QXG DNase-seq    Data format 
     ENCFF753FEX_polyA_plus_RNA-seq  ENCFF753FEX polyA_plus_RNA-seq    Data format 
     ENCFF753QCR_polyA_plus_RNA-seq  ENCFF753QCR polyA_plus_RNA-seq    Data format 
     ENCFF772ECZ_DNase-seq  ENCFF772ECZ DNase-seq    Data format 
     ENCFF774MHJ_polyA_plus_RNA-seq  ENCFF774MHJ polyA_plus_RNA-seq    Data format 
     ENCFF799EDE_DNase-seq  ENCFF799EDE DNase-seq    Data format 
     ENCFF828NJC_polyA_plus_RNA-seq  ENCFF828NJC polyA_plus_RNA-seq    Data format 
     ENCFF852RDH_DNase-seq  ENCFF852RDH DNase-seq    Data format 
     ENCFF877ULZ_DNase-seq  ENCFF877ULZ DNase-seq    Data format 
     ENCFF896MBN_polyA_plus_RNA-seq  ENCFF896MBN polyA_plus_RNA-seq    Data format 
     ENCFF903LSX_DNase-seq  ENCFF903LSX DNase-seq    Data format 
     ENCFF931RCZ_DNase-seq  ENCFF931RCZ DNase-seq    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:signal_of_unique_reads
Sample:left_kidney
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF