Sample Summary left_renal_pelvis Summary Track Settings
 
Roadmap Epigenome left_renal_pelvis Summary

Track collection: Sample Summary

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     ENCFF082LJF_polyA_plus_RNA-seq  ENCFF082LJF polyA_plus_RNA-seq    Data format 
     ENCFF123MLK_polyA_plus_RNA-seq  ENCFF123MLK polyA_plus_RNA-seq    Data format 
     ENCFF137RZI_polyA_plus_RNA-seq  ENCFF137RZI polyA_plus_RNA-seq    Data format 
     ENCFF155NBN_DNase-seq  ENCFF155NBN DNase-seq    Data format 
     ENCFF179RFI_polyA_plus_RNA-seq  ENCFF179RFI polyA_plus_RNA-seq    Data format 
     ENCFF245IYM_DNase-seq  ENCFF245IYM DNase-seq    Data format 
     ENCFF287KBE_polyA_plus_RNA-seq  ENCFF287KBE polyA_plus_RNA-seq    Data format 
     ENCFF291LPX_polyA_plus_RNA-seq  ENCFF291LPX polyA_plus_RNA-seq    Data format 
     ENCFF328SGD_polyA_plus_RNA-seq  ENCFF328SGD polyA_plus_RNA-seq    Data format 
     ENCFF438RWP_polyA_plus_RNA-seq  ENCFF438RWP polyA_plus_RNA-seq    Data format 
     ENCFF459MYY_DNase-seq  ENCFF459MYY DNase-seq    Data format 
     ENCFF466OTS_DNase-seq  ENCFF466OTS DNase-seq    Data format 
     ENCFF468WHL_DNase-seq  ENCFF468WHL DNase-seq    Data format 
     ENCFF507QYY_polyA_plus_RNA-seq  ENCFF507QYY polyA_plus_RNA-seq    Data format 
     ENCFF559IDA_polyA_plus_RNA-seq  ENCFF559IDA polyA_plus_RNA-seq    Data format 
     ENCFF563MLL_polyA_plus_RNA-seq  ENCFF563MLL polyA_plus_RNA-seq    Data format 
     ENCFF637LBX_DNase-seq  ENCFF637LBX DNase-seq    Data format 
     ENCFF644LZM_DNase-seq  ENCFF644LZM DNase-seq    Data format 
     ENCFF688UBR_DNase-seq  ENCFF688UBR DNase-seq    Data format 
     ENCFF861BCL_polyA_plus_RNA-seq  ENCFF861BCL polyA_plus_RNA-seq    Data format 
     ENCFF881ITI_polyA_plus_RNA-seq  ENCFF881ITI polyA_plus_RNA-seq    Data format 
     ENCFF906QTH_polyA_plus_RNA-seq  ENCFF906QTH polyA_plus_RNA-seq    Data format 
     ENCFF952EPU_polyA_plus_RNA-seq  ENCFF952EPU polyA_plus_RNA-seq    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:signal_of_all_reads
Sample:left_renal_cortex_interstitium
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF