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Roadmap Epigenome liver Summary

Track collection: Sample Summary

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     ENCFF005YXB_H3K36me3  ENCFF005YXB H3K36me3    Data format 
     ENCFF020XSD_H3K9me3  ENCFF020XSD H3K9me3    Data format 
     ENCFF024RKN_H3K36me3  ENCFF024RKN H3K36me3    Data format 
     ENCFF038VGT_H3K4me1  ENCFF038VGT H3K4me1    Data format 
     ENCFF053IVC_H3K4me3  ENCFF053IVC H3K4me3    Data format 
     ENCFF063HVC_H3K4me1  ENCFF063HVC H3K4me1    Data format 
     ENCFF068SPR_H3K36me3  ENCFF068SPR H3K36me3    Data format 
     ENCFF069ZID_H3K4me3  ENCFF069ZID H3K4me3    Data format 
     ENCFF092AOF_H3K4me1  ENCFF092AOF H3K4me1    Data format 
     ENCFF106PVY_H3K27ac  ENCFF106PVY H3K27ac    Data format 
     ENCFF110UPN_H3K27me3  ENCFF110UPN H3K27me3    Data format 
     ENCFF111FWN_H3K36me3  ENCFF111FWN H3K36me3    Data format 
     ENCFF112IXW_polyA_plus_RNA-seq  ENCFF112IXW polyA_plus_RNA-seq    Data format 
     ENCFF151YYY_H3K4me3  ENCFF151YYY H3K4me3    Data format 
     ENCFF156KVM_H3K9me3  ENCFF156KVM H3K9me3    Data format 
     ENCFF169JTR_H3K36me3  ENCFF169JTR H3K36me3    Data format 
     ENCFF179RUF_H3K27me3  ENCFF179RUF H3K27me3    Data format 
     ENCFF182IGR_polyA_plus_RNA-seq  ENCFF182IGR polyA_plus_RNA-seq    Data format 
     ENCFF186YCU_polyA_plus_RNA-seq  ENCFF186YCU polyA_plus_RNA-seq    Data format 
     ENCFF194SCU_H3K9me3  ENCFF194SCU H3K9me3    Data format 
     ENCFF211ANT_H3K27ac  ENCFF211ANT H3K27ac    Data format 
     ENCFF215LWY_H3K4me3  ENCFF215LWY H3K4me3    Data format 
     ENCFF218ECO_H3K27ac  ENCFF218ECO H3K27ac    Data format 
     ENCFF241GXI_H3K36me3  ENCFF241GXI H3K36me3    Data format 
     ENCFF245XLB_H3K4me1  ENCFF245XLB H3K4me1    Data format 
     ENCFF274UTN_H3K36me3  ENCFF274UTN H3K36me3    Data format 
     ENCFF275OLK_H3K27ac  ENCFF275OLK H3K27ac    Data format 
     ENCFF280QYJ_H3K4me3  ENCFF280QYJ H3K4me3    Data format 
     ENCFF288FGP_H3K4me1  ENCFF288FGP H3K4me1    Data format 
     ENCFF303YLL_H3K36me3  ENCFF303YLL H3K36me3    Data format 
     ENCFF318ORB_H3K9me3  ENCFF318ORB H3K9me3    Data format 
     ENCFF322QRJ_H3K27me3  ENCFF322QRJ H3K27me3    Data format 
     ENCFF334PFQ_H3K9me3  ENCFF334PFQ H3K9me3    Data format 
     ENCFF335LNH_H3K36me3  ENCFF335LNH H3K36me3    Data format 
     ENCFF342CII_polyA_plus_RNA-seq  ENCFF342CII polyA_plus_RNA-seq    Data format 
     ENCFF350BYI_H3K27ac  ENCFF350BYI H3K27ac    Data format 
     ENCFF354XEZ_H3K4me1  ENCFF354XEZ H3K4me1    Data format 
     ENCFF356XDG_H3K36me3  ENCFF356XDG H3K36me3    Data format 
     ENCFF358EBR_H3K4me3  ENCFF358EBR H3K4me3    Data format 
     ENCFF363OVH_H3K27me3  ENCFF363OVH H3K27me3    Data format 
     ENCFF368YHR_H3K9me3  ENCFF368YHR H3K9me3    Data format 
     ENCFF371LJV_H3K9me3  ENCFF371LJV H3K9me3    Data format 
     ENCFF375FGA_H3K27me3  ENCFF375FGA H3K27me3    Data format 
     ENCFF375ZQK_H3K4me1  ENCFF375ZQK H3K4me1    Data format 
     ENCFF383GNY_H3K4me1  ENCFF383GNY H3K4me1    Data format 
     ENCFF388GDR_H3K36me3  ENCFF388GDR H3K36me3    Data format 
     ENCFF407COE_H3K27ac  ENCFF407COE H3K27ac    Data format 
     ENCFF415REV_H3K36me3  ENCFF415REV H3K36me3    Data format 
     ENCFF425KUU_H3K4me1  ENCFF425KUU H3K4me1    Data format 
     ENCFF434NLF_H3K9me3  ENCFF434NLF H3K9me3    Data format 
     ENCFF443GFE_H3K27me3  ENCFF443GFE H3K27me3    Data format 
     ENCFF462KFY_H3K27ac  ENCFF462KFY H3K27ac    Data format 
     ENCFF471TIS_H3K4me3  ENCFF471TIS H3K4me3    Data format 
     ENCFF472SRP_H3K9me3  ENCFF472SRP H3K9me3    Data format 
     ENCFF474QXZ_H3K27me3  ENCFF474QXZ H3K27me3    Data format 
     ENCFF476BNO_H3K36me3  ENCFF476BNO H3K36me3    Data format 
     ENCFF476YVH_H3K27me3  ENCFF476YVH H3K27me3    Data format 
     ENCFF478OWW_polyA_plus_RNA-seq  ENCFF478OWW polyA_plus_RNA-seq    Data format 
     ENCFF495VSL_H3K27me3  ENCFF495VSL H3K27me3    Data format 
     ENCFF501YDC_H3K9ac  ENCFF501YDC H3K9ac    Data format 
     ENCFF503IVF_polyA_plus_RNA-seq  ENCFF503IVF polyA_plus_RNA-seq    Data format 
     ENCFF513NLK_H3K27me3  ENCFF513NLK H3K27me3    Data format 
     ENCFF534EAO_H3K27me3  ENCFF534EAO H3K27me3    Data format 
     ENCFF534QWZ_polyA_plus_RNA-seq  ENCFF534QWZ polyA_plus_RNA-seq    Data format 
     ENCFF535KAG_H3K9me3  ENCFF535KAG H3K9me3    Data format 
     ENCFF537FRY_H3K4me3  ENCFF537FRY H3K4me3    Data format 
     ENCFF538BJP_H3K27me3  ENCFF538BJP H3K27me3    Data format 
     ENCFF539LWO_H3K4me1  ENCFF539LWO H3K4me1    Data format 
     ENCFF549OBG_H3K4me1  ENCFF549OBG H3K4me1    Data format 
     ENCFF555QGS_H3K27ac  ENCFF555QGS H3K27ac    Data format 
     ENCFF560OUF_H3K9me3  ENCFF560OUF H3K9me3    Data format 
     ENCFF571YMG_H3K9ac  ENCFF571YMG H3K9ac    Data format 
     ENCFF602GZK_H3K4me1  ENCFF602GZK H3K4me1    Data format 
     ENCFF611FWS_H3K27ac  ENCFF611FWS H3K27ac    Data format 
     ENCFF641UEZ_H3K4me3  ENCFF641UEZ H3K4me3    Data format 
     ENCFF650IHL_H3K9me3  ENCFF650IHL H3K9me3    Data format 
     ENCFF650WAB_H3K36me3  ENCFF650WAB H3K36me3    Data format 
     ENCFF653YIU_H3K27me3  ENCFF653YIU H3K27me3    Data format 
     ENCFF669BCZ_H3K4me3  ENCFF669BCZ H3K4me3    Data format 
     ENCFF674OQZ_H3K9ac  ENCFF674OQZ H3K9ac    Data format 
     ENCFF702XFW_H3K4me1  ENCFF702XFW H3K4me1    Data format 
     ENCFF717HQL_H3K9me3  ENCFF717HQL H3K9me3    Data format 
     ENCFF758WKE_H3K36me3  ENCFF758WKE H3K36me3    Data format 
     ENCFF759BJW_H3K4me3  ENCFF759BJW H3K4me3    Data format 
     ENCFF763IFR_H3K4me3  ENCFF763IFR H3K4me3    Data format 
     ENCFF775YWU_H3K9ac  ENCFF775YWU H3K9ac    Data format 
     ENCFF776DCT_H3K4me1  ENCFF776DCT H3K4me1    Data format 
     ENCFF777UEJ_H3K4me1  ENCFF777UEJ H3K4me1    Data format 
     ENCFF787DLE_H3K9me3  ENCFF787DLE H3K9me3    Data format 
     ENCFF805VZP_H3K9ac  ENCFF805VZP H3K9ac    Data format 
     ENCFF807IYO_H3K9ac  ENCFF807IYO H3K9ac    Data format 
     ENCFF837MEX_H3K4me3  ENCFF837MEX H3K4me3    Data format 
     ENCFF838YRN_H3K4me3  ENCFF838YRN H3K4me3    Data format 
     ENCFF853WPX_H3K27ac  ENCFF853WPX H3K27ac    Data format 
     ENCFF860SWN_H3K9ac  ENCFF860SWN H3K9ac    Data format 
     ENCFF888QSH_H3K27ac  ENCFF888QSH H3K27ac    Data format 
     ENCFF891QFV_H3K4me3  ENCFF891QFV H3K4me3    Data format 
     ENCFF905FLR_H3K27ac  ENCFF905FLR H3K27ac    Data format 
     ENCFF909EZR_H3K27me3  ENCFF909EZR H3K27me3    Data format 
     ENCFF923IFW_H3K4me1  ENCFF923IFW H3K4me1    Data format 
     ENCFF946SRR_H3K27me3  ENCFF946SRR H3K27me3    Data format 
     ENCFF958FEJ_H3K36me3  ENCFF958FEJ H3K36me3    Data format 
     ENCFF962JEC_H3K4me3  ENCFF962JEC H3K4me3    Data format 
     ENCFF972NID_H3K27me3  ENCFF972NID H3K27me3    Data format 
     ENCFF976ODV_H3K9me3  ENCFF976ODV H3K9me3    Data format 
     ENCFF984PRY_H3K9me3  ENCFF984PRY H3K9me3    Data format 
     ENCFF994FCW_H3K9ac  ENCFF994FCW H3K9ac    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:signal_of_unique_reads
Sample:layer_of_hippocampus
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF