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Roadmap Epigenome lung Summary

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     ENCFF004HAC_H3K4me1  ENCFF004HAC H3K4me1    Data format 
     ENCFF013JSB_H3K9me3  ENCFF013JSB H3K9me3    Data format 
     ENCFF022TOZ_H3K4me3  ENCFF022TOZ H3K4me3    Data format 
     ENCFF028TDS_H3K27ac  ENCFF028TDS H3K27ac    Data format 
     ENCFF029QDT_DNase-seq  ENCFF029QDT DNase-seq    Data format 
     ENCFF036EBD_H3K4me1  ENCFF036EBD H3K4me1    Data format 
     ENCFF036RHD_DNase-seq  ENCFF036RHD DNase-seq    Data format 
     ENCFF046SLU_H3K9ac  ENCFF046SLU H3K9ac    Data format 
     ENCFF050YYY_H3K4me3  ENCFF050YYY H3K4me3    Data format 
     ENCFF059LYJ_H3K27me3  ENCFF059LYJ H3K27me3    Data format 
     ENCFF061IOQ_H3K36me3  ENCFF061IOQ H3K36me3    Data format 
     ENCFF062ZIV_H3K4me3  ENCFF062ZIV H3K4me3    Data format 
     ENCFF067UVX_H3K4me3  ENCFF067UVX H3K4me3    Data format 
     ENCFF070ORW_H3K27me3  ENCFF070ORW H3K27me3    Data format 
     ENCFF072KSW_polyA_plus_RNA-seq  ENCFF072KSW polyA_plus_RNA-seq    Data format 
     ENCFF091BPG_H3K27ac  ENCFF091BPG H3K27ac    Data format 
     ENCFF105RLH_H3K27ac  ENCFF105RLH H3K27ac    Data format 
     ENCFF110TAI_H3K9ac  ENCFF110TAI H3K9ac    Data format 
     ENCFF119JUM_polyA_plus_RNA-seq  ENCFF119JUM polyA_plus_RNA-seq    Data format 
     ENCFF124RPC_polyA_plus_RNA-seq  ENCFF124RPC polyA_plus_RNA-seq    Data format 
     ENCFF127KLE_H3K4me1  ENCFF127KLE H3K4me1    Data format 
     ENCFF127MNE_H3K4me3  ENCFF127MNE H3K4me3    Data format 
     ENCFF132WYA_polyA_plus_RNA-seq  ENCFF132WYA polyA_plus_RNA-seq    Data format 
     ENCFF136NUJ_H3K9me3  ENCFF136NUJ H3K9me3    Data format 
     ENCFF155XCD_H3K27ac  ENCFF155XCD H3K27ac    Data format 
     ENCFF170BBX_H3K9me3  ENCFF170BBX H3K9me3    Data format 
     ENCFF170SDA_H3K36me3  ENCFF170SDA H3K36me3    Data format 
     ENCFF171RLN_DNase-seq  ENCFF171RLN DNase-seq    Data format 
     ENCFF172HEM_polyA_plus_RNA-seq  ENCFF172HEM polyA_plus_RNA-seq    Data format 
     ENCFF175OBA_polyA_plus_RNA-seq  ENCFF175OBA polyA_plus_RNA-seq    Data format 
     ENCFF204IAN_H3K4me1  ENCFF204IAN H3K4me1    Data format 
     ENCFF212XAA_H3K27me3  ENCFF212XAA H3K27me3    Data format 
     ENCFF223JEU_H3K27me3  ENCFF223JEU H3K27me3    Data format 
     ENCFF227ZCA_H3K36me3  ENCFF227ZCA H3K36me3    Data format 
     ENCFF228MRA_H3K9ac  ENCFF228MRA H3K9ac    Data format 
     ENCFF230PHT_H3K4me3  ENCFF230PHT H3K4me3    Data format 
     ENCFF232QEZ_H3K4me1  ENCFF232QEZ H3K4me1    Data format 
     ENCFF237UPT_H3K36me3  ENCFF237UPT H3K36me3    Data format 
     ENCFF238XGJ_H3K27me3  ENCFF238XGJ H3K27me3    Data format 
     ENCFF249IVT_WGBS  ENCFF249IVT WGBS    Data format 
     ENCFF256PVP_H3K4me3  ENCFF256PVP H3K4me3    Data format 
     ENCFF262ZVW_H3K4me1  ENCFF262ZVW H3K4me1    Data format 
     ENCFF265STI_H3K4me1  ENCFF265STI H3K4me1    Data format 
     ENCFF267BLE_DNase-seq  ENCFF267BLE DNase-seq    Data format 
     ENCFF274KBO_H3K36me3  ENCFF274KBO H3K36me3    Data format 
     ENCFF275KCQ_H3K9me3  ENCFF275KCQ H3K9me3    Data format 
     ENCFF283WCF_DNase-seq  ENCFF283WCF DNase-seq    Data format 
     ENCFF293ASZ_H3K4me3  ENCFF293ASZ H3K4me3    Data format 
     ENCFF296IXA_DNase-seq  ENCFF296IXA DNase-seq    Data format 
     ENCFF305ZXD_H3K9me3  ENCFF305ZXD H3K9me3    Data format 
     ENCFF307BSP_H3K36me3  ENCFF307BSP H3K36me3    Data format 
     ENCFF308TWI_H3K9me3  ENCFF308TWI H3K9me3    Data format 
     ENCFF324TEB_H3K27me3  ENCFF324TEB H3K27me3    Data format 
     ENCFF325EMH_H3K4me1  ENCFF325EMH H3K4me1    Data format 
     ENCFF331IOZ_H3K27ac  ENCFF331IOZ H3K27ac    Data format 
     ENCFF332YIT_H3K4me1  ENCFF332YIT H3K4me1    Data format 
     ENCFF345TBP_H3K36me3  ENCFF345TBP H3K36me3    Data format 
     ENCFF362UJZ_DNase-seq  ENCFF362UJZ DNase-seq    Data format 
     ENCFF370ZSH_H3K9me3  ENCFF370ZSH H3K9me3    Data format 
     ENCFF381XXT_H3K9ac  ENCFF381XXT H3K9ac    Data format 
     ENCFF386ZSF_H3K27me3  ENCFF386ZSF H3K27me3    Data format 
     ENCFF389LRN_H3K36me3  ENCFF389LRN H3K36me3    Data format 
     ENCFF390PEQ_H3K4me1  ENCFF390PEQ H3K4me1    Data format 
     ENCFF399JON_polyA_plus_RNA-seq  ENCFF399JON polyA_plus_RNA-seq    Data format 
     ENCFF408FSY_H3K4me1  ENCFF408FSY H3K4me1    Data format 
     ENCFF410WYL_H3K4me1  ENCFF410WYL H3K4me1    Data format 
     ENCFF411YZS_DNase-seq  ENCFF411YZS DNase-seq    Data format 
     ENCFF423RZD_H3K36me3  ENCFF423RZD H3K36me3    Data format 
     ENCFF434JKJ_H3K4me3  ENCFF434JKJ H3K4me3    Data format 
     ENCFF440HPT_H3K27me3  ENCFF440HPT H3K27me3    Data format 
     ENCFF440XJX_H3K27me3  ENCFF440XJX H3K27me3    Data format 
     ENCFF447LEJ_polyA_plus_RNA-seq  ENCFF447LEJ polyA_plus_RNA-seq    Data format 
     ENCFF471BAS_H3K36me3  ENCFF471BAS H3K36me3    Data format 
     ENCFF475YJR_DNase-seq  ENCFF475YJR DNase-seq    Data format 
     ENCFF483ZIO_H3K9ac  ENCFF483ZIO H3K9ac    Data format 
     ENCFF485XPN_H3K4me3  ENCFF485XPN H3K4me3    Data format 
     ENCFF493GCI_H3K4me1  ENCFF493GCI H3K4me1    Data format 
     ENCFF507BZS_H3K36me3  ENCFF507BZS H3K36me3    Data format 
     ENCFF530FHO_DNase-seq  ENCFF530FHO DNase-seq    Data format 
     ENCFF549SUR_H3K36me3  ENCFF549SUR H3K36me3    Data format 
     ENCFF550UNJ_H3K9ac  ENCFF550UNJ H3K9ac    Data format 
     ENCFF551TJE_H3K4me1  ENCFF551TJE H3K4me1    Data format 
     ENCFF565FPI_polyA_plus_RNA-seq  ENCFF565FPI polyA_plus_RNA-seq    Data format 
     ENCFF565YSC_polyA_plus_RNA-seq  ENCFF565YSC polyA_plus_RNA-seq    Data format 
     ENCFF593RKC_polyA_plus_RNA-seq  ENCFF593RKC polyA_plus_RNA-seq    Data format 
     ENCFF601KKI_H3K4me1  ENCFF601KKI H3K4me1    Data format 
     ENCFF603DYO_H3K4me3  ENCFF603DYO H3K4me3    Data format 
     ENCFF606ESZ_DNase-seq  ENCFF606ESZ DNase-seq    Data format 
     ENCFF609EGN_DNase-seq  ENCFF609EGN DNase-seq    Data format 
     ENCFF615TDR_H3K9me3  ENCFF615TDR H3K9me3    Data format 
     ENCFF623ZUR_polyA_plus_RNA-seq  ENCFF623ZUR polyA_plus_RNA-seq    Data format 
     ENCFF629RAA_H3K27ac  ENCFF629RAA H3K27ac    Data format 
     ENCFF631RJC_DNase-seq  ENCFF631RJC DNase-seq    Data format 
     ENCFF643CUS_polyA_plus_RNA-seq  ENCFF643CUS polyA_plus_RNA-seq    Data format 
     ENCFF645EXF_H3K9ac  ENCFF645EXF H3K9ac    Data format 
     ENCFF655YLP_H3K36me3  ENCFF655YLP H3K36me3    Data format 
     ENCFF659ZRM_DNase-seq  ENCFF659ZRM DNase-seq    Data format 
     ENCFF669POI_DNase-seq  ENCFF669POI DNase-seq    Data format 
     ENCFF670OYA_H3K4me3  ENCFF670OYA H3K4me3    Data format 
     ENCFF693OWK_H3K27me3  ENCFF693OWK H3K27me3    Data format 
     ENCFF710LQM_DNase-seq  ENCFF710LQM DNase-seq    Data format 
     ENCFF717SFX_H3K27ac  ENCFF717SFX H3K27ac    Data format 
     ENCFF727RWZ_H3K36me3  ENCFF727RWZ H3K36me3    Data format 
     ENCFF743VYP_DNase-seq  ENCFF743VYP DNase-seq    Data format 
     ENCFF754JLV_DNase-seq  ENCFF754JLV DNase-seq    Data format 
     ENCFF757EBZ_H3K4me1  ENCFF757EBZ H3K4me1    Data format 
     ENCFF760OII_H3K4me1  ENCFF760OII H3K4me1    Data format 
     ENCFF804QDI_DNase-seq  ENCFF804QDI DNase-seq    Data format 
     ENCFF821WNV_H3K36me3  ENCFF821WNV H3K36me3    Data format 
     ENCFF822FGO_H3K27me3  ENCFF822FGO H3K27me3    Data format 
     ENCFF828AET_polyA_plus_RNA-seq  ENCFF828AET polyA_plus_RNA-seq    Data format 
     ENCFF829LZD_H3K9me3  ENCFF829LZD H3K9me3    Data format 
     ENCFF833ETX_H3K9ac  ENCFF833ETX H3K9ac    Data format 
     ENCFF839NZT_H3K4me3  ENCFF839NZT H3K4me3    Data format 
     ENCFF856MGM_H3K27me3  ENCFF856MGM H3K27me3    Data format 
     ENCFF863ULY_polyA_plus_RNA-seq  ENCFF863ULY polyA_plus_RNA-seq    Data format 
     ENCFF883XTW_H3K9me3  ENCFF883XTW H3K9me3    Data format 
     ENCFF896AGZ_H3K9me3  ENCFF896AGZ H3K9me3    Data format 
     ENCFF896NVM_H3K4me1  ENCFF896NVM H3K4me1    Data format 
     ENCFF899HCF_DNase-seq  ENCFF899HCF DNase-seq    Data format 
     ENCFF900HNB_H3K27ac  ENCFF900HNB H3K27ac    Data format 
     ENCFF910JMH_H3K4me3  ENCFF910JMH H3K4me3    Data format 
     ENCFF926QND_H3K4me1  ENCFF926QND H3K4me1    Data format 
     ENCFF939ELA_H3K4me3  ENCFF939ELA H3K4me3    Data format 
     ENCFF941SMS_polyA_plus_RNA-seq  ENCFF941SMS polyA_plus_RNA-seq    Data format 
     ENCFF943PCH_H3K9me3  ENCFF943PCH H3K9me3    Data format 
     ENCFF956PHC_H3K36me3  ENCFF956PHC H3K36me3    Data format 
     ENCFF962MQG_H3K9me3  ENCFF962MQG H3K9me3    Data format 
     ENCFF970KWF_H3K9me3  ENCFF970KWF H3K9me3    Data format 
     ENCFF984WOD_H3K9me3  ENCFF984WOD H3K9me3    Data format 
     ENCFF991AHY_H3K4me1  ENCFF991AHY H3K4me1    Data format 
     ENCFF997LOA_H3K9me3  ENCFF997LOA H3K9me3    Data format 
     ENCFF999LEM_H3K4me3  ENCFF999LEM H3K4me3    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:plus_strand_signal_of_all_reads
Sample:luminal_epithelial_cell_of_mammary_gland
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF