Sample Summary mammary_stem_cell Summary Track Settings
 
Roadmap Epigenome mammary_stem_cell Summary

Track collection: Sample Summary

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+  All tracks in this collection (133)

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     ENCFF141WXA_microRNA-seq  ENCFF141WXA microRNA-seq    Data format 
     ENCFF155JOU_H3K36me3  ENCFF155JOU H3K36me3    Data format 
     ENCFF209QZE_microRNA-seq  ENCFF209QZE microRNA-seq    Data format 
     ENCFF439JSX_polyA_plus_RNA-seq  ENCFF439JSX polyA_plus_RNA-seq    Data format 
     ENCFF476QWR_H3K36me3  ENCFF476QWR H3K36me3    Data format 
     ENCFF476WKS_microRNA-seq  ENCFF476WKS microRNA-seq    Data format 
     ENCFF501AJI_H3K36me3  ENCFF501AJI H3K36me3    Data format 
     ENCFF709TOL_polyA_plus_RNA-seq  ENCFF709TOL polyA_plus_RNA-seq    Data format 
     ENCFF742ZUR_microRNA-seq  ENCFF742ZUR microRNA-seq    Data format 
     ENCFF779WTD_microRNA-seq  ENCFF779WTD microRNA-seq    Data format 
     ENCFF797DAJ_H3K36me3  ENCFF797DAJ H3K36me3    Data format 
     ENCFF797YFO_microRNA-seq  ENCFF797YFO microRNA-seq    Data format 
     ENCFF867KUO_polyA_plus_RNA-seq  ENCFF867KUO polyA_plus_RNA-seq    Data format 
     ENCFF907MOZ_microRNA-seq  ENCFF907MOZ microRNA-seq    Data format 
     ENCFF991VIF_microRNA-seq  ENCFF991VIF microRNA-seq    Data format 
    
Metadata:
Assay:polyA_plus_RNA-seq
OutputType:minus_strand_signal_of_all_reads
Sample:mammary_epithelial_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF