Sample Summary mesendoderm Summary Track Settings
 
Roadmap Epigenome mesendoderm Summary

Track collection: Sample Summary

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     ENCFF007XTG_H2BK120ac  ENCFF007XTG H2BK120ac    Data format 
     ENCFF012SSE_H3K4me1  ENCFF012SSE H3K4me1    Data format 
     ENCFF012YIP_H3K79me2  ENCFF012YIP H3K79me2    Data format 
     ENCFF020FYG_H2AK5ac  ENCFF020FYG H2AK5ac    Data format 
     ENCFF021OFY_H2BK15ac  ENCFF021OFY H2BK15ac    Data format 
     ENCFF030DLU_H3K9ac  ENCFF030DLU H3K9ac    Data format 
     ENCFF030VBS_H3K36me3  ENCFF030VBS H3K36me3    Data format 
     ENCFF033UTA_H3K4ac  ENCFF033UTA H3K4ac    Data format 
     ENCFF035FZJ_H2BK5ac  ENCFF035FZJ H2BK5ac    Data format 
     ENCFF036DIY_H3K27ac  ENCFF036DIY H3K27ac    Data format 
     ENCFF037OQS_H2BK5ac  ENCFF037OQS H2BK5ac    Data format 
     ENCFF040VUE_H3K36me3  ENCFF040VUE H3K36me3    Data format 
     ENCFF041HRA_H3K9ac  ENCFF041HRA H3K9ac    Data format 
     ENCFF044IQE_small_RNA-seq  ENCFF044IQE small_RNA-seq    Data format 
     ENCFF051HEM_H3K27me3  ENCFF051HEM H3K27me3    Data format 
     ENCFF052XMR_H3K27ac  ENCFF052XMR H3K27ac    Data format 
     ENCFF053UIK_H3K36me3  ENCFF053UIK H3K36me3    Data format 
     ENCFF053ULC_H3K9ac  ENCFF053ULC H3K9ac    Data format 
     ENCFF054YRU_H2BK120ac  ENCFF054YRU H2BK120ac    Data format 
     ENCFF060XAU_H3K79me2  ENCFF060XAU H3K79me2    Data format 
     ENCFF079PZG_H2BK15ac  ENCFF079PZG H2BK15ac    Data format 
     ENCFF090CRO_H3K79me2  ENCFF090CRO H3K79me2    Data format 
     ENCFF091KUA_H2BK120ac  ENCFF091KUA H2BK120ac    Data format 
     ENCFF093FHO_polyA_plus_RNA-seq  ENCFF093FHO polyA_plus_RNA-seq    Data format 
     ENCFF096IDH_H2BK5ac  ENCFF096IDH H2BK5ac    Data format 
     ENCFF097BTA_H2BK5ac  ENCFF097BTA H2BK5ac    Data format 
     ENCFF100WFU_DNase-seq  ENCFF100WFU DNase-seq    Data format 
     ENCFF101ASV_polyA_plus_RNA-seq  ENCFF101ASV polyA_plus_RNA-seq    Data format 
     ENCFF103HFY_H3K27me3  ENCFF103HFY H3K27me3    Data format 
     ENCFF107NKE_H2AK5ac  ENCFF107NKE H2AK5ac    Data format 
     ENCFF117CJX_H2BK120ac  ENCFF117CJX H2BK120ac    Data format 
     ENCFF119QIT_H3K79me1  ENCFF119QIT H3K79me1    Data format 
     ENCFF125VSJ_H3K79me2  ENCFF125VSJ H3K79me2    Data format 
     ENCFF127JHL_H3K4me2  ENCFF127JHL H3K4me2    Data format 
     ENCFF127WWU_H2BK15ac  ENCFF127WWU H2BK15ac    Data format 
     ENCFF132ZXA_polyA_plus_RNA-seq  ENCFF132ZXA polyA_plus_RNA-seq    Data format 
     ENCFF135SJQ_H3K4me3  ENCFF135SJQ H3K4me3    Data format 
     ENCFF138LDI_H2BK5ac  ENCFF138LDI H2BK5ac    Data format 
     ENCFF140DNB_H3K9ac  ENCFF140DNB H3K9ac    Data format 
     ENCFF142CYK_H2AK5ac  ENCFF142CYK H2AK5ac    Data format 
     ENCFF144CAK_H4K8ac  ENCFF144CAK H4K8ac    Data format 
     ENCFF148QZZ_H3K27ac  ENCFF148QZZ H3K27ac    Data format 
     ENCFF160QGF_H3K18ac  ENCFF160QGF H3K18ac    Data format 
     ENCFF161ALQ_H3K36me3  ENCFF161ALQ H3K36me3    Data format 
     ENCFF161RKL_H3K4me1  ENCFF161RKL H3K4me1    Data format 
     ENCFF163IYP_H3K56ac  ENCFF163IYP H3K56ac    Data format 
     ENCFF172QQF_H2BK120ac  ENCFF172QQF H2BK120ac    Data format 
     ENCFF181NTU_small_RNA-seq  ENCFF181NTU small_RNA-seq    Data format 
     ENCFF185CUF_polyA_plus_RNA-seq  ENCFF185CUF polyA_plus_RNA-seq    Data format 
     ENCFF187FRA_H3K79me1  ENCFF187FRA H3K79me1    Data format 
     ENCFF193CNG_H2BK5ac  ENCFF193CNG H2BK5ac    Data format 
     ENCFF194IBK_H3K79me1  ENCFF194IBK H3K79me1    Data format 
     ENCFF194JFQ_H3K18ac  ENCFF194JFQ H3K18ac    Data format 
     ENCFF196GUZ_H3K4me3  ENCFF196GUZ H3K4me3    Data format 
     ENCFF206XNC_H3K4me2  ENCFF206XNC H3K4me2    Data format 
     ENCFF211SJO_H3K9ac  ENCFF211SJO H3K9ac    Data format 
     ENCFF218BWP_small_RNA-seq  ENCFF218BWP small_RNA-seq    Data format 
     ENCFF219ZKQ_H3K18ac  ENCFF219ZKQ H3K18ac    Data format 
     ENCFF224NBE_H3K18ac  ENCFF224NBE H3K18ac    Data format 
     ENCFF230VYG_H3K79me2  ENCFF230VYG H3K79me2    Data format 
     ENCFF238KNX_H3K4me3  ENCFF238KNX H3K4me3    Data format 
     ENCFF240FDY_H3K79me1  ENCFF240FDY H3K79me1    Data format 
     ENCFF243XLW_H3K27me3  ENCFF243XLW H3K27me3    Data format 
     ENCFF246HCB_H3K4me2  ENCFF246HCB H3K4me2    Data format 
     ENCFF247GZQ_H2BK15ac  ENCFF247GZQ H2BK15ac    Data format 
     ENCFF250WWR_H3K27me3  ENCFF250WWR H3K27me3    Data format 
     ENCFF250YIN_H3K79me2  ENCFF250YIN H3K79me2    Data format 
     ENCFF252NWZ_H2BK120ac  ENCFF252NWZ H2BK120ac    Data format 
     ENCFF258POA_H3K4me1  ENCFF258POA H3K4me1    Data format 
     ENCFF260TTI_H3K4me2  ENCFF260TTI H3K4me2    Data format 
     ENCFF268OKJ_H3K4me3  ENCFF268OKJ H3K4me3    Data format 
     ENCFF277KTD_H3K27me3  ENCFF277KTD H3K27me3    Data format 
     ENCFF279BVL_H2AK5ac  ENCFF279BVL H2AK5ac    Data format 
     ENCFF279OLJ_polyA_plus_RNA-seq  ENCFF279OLJ polyA_plus_RNA-seq    Data format 
     ENCFF289IZJ_H3K27ac  ENCFF289IZJ H3K27ac    Data format 
     ENCFF292DFI_H2AK5ac  ENCFF292DFI H2AK5ac    Data format 
     ENCFF293KCV_H4K5ac  ENCFF293KCV H4K5ac    Data format 
     ENCFF300HHK_H3K36me3  ENCFF300HHK H3K36me3    Data format 
     ENCFF301OLJ_H3K9ac  ENCFF301OLJ H3K9ac    Data format 
     ENCFF308XUS_H3K36me3  ENCFF308XUS H3K36me3    Data format 
     ENCFF309VRV_H2BK15ac  ENCFF309VRV H2BK15ac    Data format 
     ENCFF313DOD_H3K27ac  ENCFF313DOD H3K27ac    Data format 
     ENCFF313ORF_H3K79me2  ENCFF313ORF H3K79me2    Data format 
     ENCFF314KSM_H3K9ac  ENCFF314KSM H3K9ac    Data format 
     ENCFF316TCW_H3K18ac  ENCFF316TCW H3K18ac    Data format 
     ENCFF326MPG_H3K27ac  ENCFF326MPG H3K27ac    Data format 
     ENCFF327LAJ_H3K27ac  ENCFF327LAJ H3K27ac    Data format 
     ENCFF329KBC_H3K4me3  ENCFF329KBC H3K4me3    Data format 
     ENCFF333EGO_H3K79me1  ENCFF333EGO H3K79me1    Data format 
     ENCFF333YCB_H3K79me2  ENCFF333YCB H3K79me2    Data format 
     ENCFF338VZQ_H2BK120ac  ENCFF338VZQ H2BK120ac    Data format 
     ENCFF344CWL_H3K4me1  ENCFF344CWL H3K4me1    Data format 
     ENCFF348ZPM_H3K56ac  ENCFF348ZPM H3K56ac    Data format 
     ENCFF349YCN_H3K4me2  ENCFF349YCN H3K4me2    Data format 
     ENCFF356IQK_H3K23ac  ENCFF356IQK H3K23ac    Data format 
     ENCFF366XON_H3K4me2  ENCFF366XON H3K4me2    Data format 
     ENCFF370RDH_H3K36me3  ENCFF370RDH H3K36me3    Data format 
     ENCFF373WQE_polyA_plus_RNA-seq  ENCFF373WQE polyA_plus_RNA-seq    Data format 
     ENCFF374ZLT_H3K4me2  ENCFF374ZLT H3K4me2    Data format 
     ENCFF380ZOR_H3K23ac  ENCFF380ZOR H3K23ac    Data format 
     ENCFF382MAM_H3K4me3  ENCFF382MAM H3K4me3    Data format 
     ENCFF389GSX_H3K27me3  ENCFF389GSX H3K27me3    Data format 
     ENCFF390RBD_H2BK5ac  ENCFF390RBD H2BK5ac    Data format 
     ENCFF397PZK_H2BK15ac  ENCFF397PZK H2BK15ac    Data format 
     ENCFF404GUH_H3K4me1  ENCFF404GUH H3K4me1    Data format 
     ENCFF406TJH_H4K8ac  ENCFF406TJH H4K8ac    Data format 
     ENCFF411BWN_H3K79me1  ENCFF411BWN H3K79me1    Data format 
     ENCFF420QRP_polyA_plus_RNA-seq  ENCFF420QRP polyA_plus_RNA-seq    Data format 
     ENCFF431EQQ_H3K79me2  ENCFF431EQQ H3K79me2    Data format 
     ENCFF435PRH_polyA_plus_RNA-seq  ENCFF435PRH polyA_plus_RNA-seq    Data format 
     ENCFF437VOS_H3K79me1  ENCFF437VOS H3K79me1    Data format 
     ENCFF440TLI_H2BK5ac  ENCFF440TLI H2BK5ac    Data format 
     ENCFF442JEY_H2BK15ac  ENCFF442JEY H2BK15ac    Data format 
     ENCFF442XXT_H3K36me3  ENCFF442XXT H3K36me3    Data format 
     ENCFF445IYK_H3K4ac  ENCFF445IYK H3K4ac    Data format 
     ENCFF447PRR_H3K9ac  ENCFF447PRR H3K9ac    Data format 
     ENCFF450QUK_H3K27ac  ENCFF450QUK H3K27ac    Data format 
     ENCFF460GIV_polyA_plus_RNA-seq  ENCFF460GIV polyA_plus_RNA-seq    Data format 
     ENCFF462KJC_H3K79me1  ENCFF462KJC H3K79me1    Data format 
     ENCFF462MUY_H2BK120ac  ENCFF462MUY H2BK120ac    Data format 
     ENCFF462SXZ_H3K79me1  ENCFF462SXZ H3K79me1    Data format 
     ENCFF465FVI_polyA_plus_RNA-seq  ENCFF465FVI polyA_plus_RNA-seq    Data format 
     ENCFF466ALG_H2BK15ac  ENCFF466ALG H2BK15ac    Data format 
     ENCFF476FXJ_H3K4me1  ENCFF476FXJ H3K4me1    Data format 
     ENCFF478OXE_H2AK5ac  ENCFF478OXE H2AK5ac    Data format 
     ENCFF485MPD_H3K4me1  ENCFF485MPD H3K4me1    Data format 
     ENCFF498HAY_polyA_plus_RNA-seq  ENCFF498HAY polyA_plus_RNA-seq    Data format 
     ENCFF503FNN_H4K8ac  ENCFF503FNN H4K8ac    Data format 
     ENCFF515OPP_H3K79me2  ENCFF515OPP H3K79me2    Data format 
     ENCFF517ZTV_H2AK5ac  ENCFF517ZTV H2AK5ac    Data format 
     ENCFF524YYF_H3K9ac  ENCFF524YYF H3K9ac    Data format 
     ENCFF528DTG_H2AK5ac  ENCFF528DTG H2AK5ac    Data format 
     ENCFF531KYX_H2AK5ac  ENCFF531KYX H2AK5ac    Data format 
     ENCFF535JPJ_H3K27ac  ENCFF535JPJ H3K27ac    Data format 
     ENCFF537NKE_H2BK120ac  ENCFF537NKE H2BK120ac    Data format 
     ENCFF538ADF_H3K4ac  ENCFF538ADF H3K4ac    Data format 
     ENCFF540FHE_H3K18ac  ENCFF540FHE H3K18ac    Data format 
     ENCFF540SFY_H3K9ac  ENCFF540SFY H3K9ac    Data format 
     ENCFF542YUX_H3K56ac  ENCFF542YUX H3K56ac    Data format 
     ENCFF545RKP_H3K18ac  ENCFF545RKP H3K18ac    Data format 
     ENCFF547AUI_H3K27me3  ENCFF547AUI H3K27me3    Data format 
     ENCFF549BQL_H3K9ac  ENCFF549BQL H3K9ac    Data format 
     ENCFF554PSM_H3K4me2  ENCFF554PSM H3K4me2    Data format 
     ENCFF570LOP_H3K36me3  ENCFF570LOP H3K36me3    Data format 
     ENCFF581SBM_H2BK15ac  ENCFF581SBM H2BK15ac    Data format 
     ENCFF584WIB_H3K27ac  ENCFF584WIB H3K27ac    Data format 
     ENCFF588IAJ_H3K23ac  ENCFF588IAJ H3K23ac    Data format 
     ENCFF604FUM_H4K5ac  ENCFF604FUM H4K5ac    Data format 
     ENCFF610TMA_H2BK15ac  ENCFF610TMA H2BK15ac    Data format 
     ENCFF624UFX_H3K4me1  ENCFF624UFX H3K4me1    Data format 
     ENCFF631UAS_H3K27ac  ENCFF631UAS H3K27ac    Data format 
     ENCFF640DMY_small_RNA-seq  ENCFF640DMY small_RNA-seq    Data format 
     ENCFF643CEI_small_RNA-seq  ENCFF643CEI small_RNA-seq    Data format 
     ENCFF645YMQ_WGBS  ENCFF645YMQ WGBS    Data format 
     ENCFF646APT_H3K23ac  ENCFF646APT H3K23ac    Data format 
     ENCFF646NFR_H3K56ac  ENCFF646NFR H3K56ac    Data format 
     ENCFF653YLL_H3K27ac  ENCFF653YLL H3K27ac    Data format 
     ENCFF655ZRF_H3K18ac  ENCFF655ZRF H3K18ac    Data format 
     ENCFF660INF_H2BK5ac  ENCFF660INF H2BK5ac    Data format 
     ENCFF664YDU_H2BK120ac  ENCFF664YDU H2BK120ac    Data format 
     ENCFF665QEX_H2BK15ac  ENCFF665QEX H2BK15ac    Data format 
     ENCFF671IFS_H3K27me3  ENCFF671IFS H3K27me3    Data format 
     ENCFF686LEJ_H3K27me3  ENCFF686LEJ H3K27me3    Data format 
     ENCFF689LXY_H3K4me1  ENCFF689LXY H3K4me1    Data format 
     ENCFF695MGL_H3K79me1  ENCFF695MGL H3K79me1    Data format 
     ENCFF712KGJ_H3K18ac  ENCFF712KGJ H3K18ac    Data format 
     ENCFF714FHY_H2AK5ac  ENCFF714FHY H2AK5ac    Data format 
     ENCFF717RYS_H3K4ac  ENCFF717RYS H3K4ac    Data format 
     ENCFF733YSQ_H2BK120ac  ENCFF733YSQ H2BK120ac    Data format 
     ENCFF736GKF_H2AK5ac  ENCFF736GKF H2AK5ac    Data format 
     ENCFF740JWV_H4K5ac  ENCFF740JWV H4K5ac    Data format 
     ENCFF748XLQ_H3K4me3  ENCFF748XLQ H3K4me3    Data format 
     ENCFF753WKE_H3K4me2  ENCFF753WKE H3K4me2    Data format 
     ENCFF768JOP_H4K8ac  ENCFF768JOP H4K8ac    Data format 
     ENCFF768YYH_H3K79me1  ENCFF768YYH H3K79me1    Data format 
     ENCFF792HPA_H3K18ac  ENCFF792HPA H3K18ac    Data format 
     ENCFF797RZK_H3K79me2  ENCFF797RZK H3K79me2    Data format 
     ENCFF802CCC_H3K4me3  ENCFF802CCC H3K4me3    Data format 
     ENCFF802JUP_H2AK5ac  ENCFF802JUP H2AK5ac    Data format 
     ENCFF806TLA_H2BK120ac  ENCFF806TLA H2BK120ac    Data format 
     ENCFF810TUO_H2BK5ac  ENCFF810TUO H2BK5ac    Data format 
     ENCFF811FKH_polyA_plus_RNA-seq  ENCFF811FKH polyA_plus_RNA-seq    Data format 
     ENCFF814CBR_polyA_plus_RNA-seq  ENCFF814CBR polyA_plus_RNA-seq    Data format 
     ENCFF818ANI_H3K18ac  ENCFF818ANI H3K18ac    Data format 
     ENCFF821BLF_H2BK5ac  ENCFF821BLF H2BK5ac    Data format 
     ENCFF828OOI_H3K27me3  ENCFF828OOI H3K27me3    Data format 
     ENCFF832ZCY_H3K4me3  ENCFF832ZCY H3K4me3    Data format 
     ENCFF840GCW_polyA_plus_RNA-seq  ENCFF840GCW polyA_plus_RNA-seq    Data format 
     ENCFF840OYH_H3K27me3  ENCFF840OYH H3K27me3    Data format 
     ENCFF851SLX_H2BK15ac  ENCFF851SLX H2BK15ac    Data format 
     ENCFF855RJA_H3K4me2  ENCFF855RJA H3K4me2    Data format 
     ENCFF859UDN_H3K79me2  ENCFF859UDN H3K79me2    Data format 
     ENCFF868EOM_small_RNA-seq  ENCFF868EOM small_RNA-seq    Data format 
     ENCFF868LSK_H3K79me1  ENCFF868LSK H3K79me1    Data format 
     ENCFF869WZO_H3K4me3  ENCFF869WZO H3K4me3    Data format 
     ENCFF871KHG_H4K5ac  ENCFF871KHG H4K5ac    Data format 
     ENCFF878FDQ_H3K36me3  ENCFF878FDQ H3K36me3    Data format 
     ENCFF885OUW_H3K4me2  ENCFF885OUW H3K4me2    Data format 
     ENCFF891OII_H3K4me3  ENCFF891OII H3K4me3    Data format 
     ENCFF894WLL_H3K4me1  ENCFF894WLL H3K4me1    Data format 
     ENCFF907THR_small_RNA-seq  ENCFF907THR small_RNA-seq    Data format 
     ENCFF918FRW_DNase-seq  ENCFF918FRW DNase-seq    Data format 
     ENCFF919ROJ_H3K36me3  ENCFF919ROJ H3K36me3    Data format 
     ENCFF929ZGP_H3K27me3  ENCFF929ZGP H3K27me3    Data format 
     ENCFF930RHP_H3K9ac  ENCFF930RHP H3K9ac    Data format 
     ENCFF931YTH_H3K4me1  ENCFF931YTH H3K4me1    Data format 
     ENCFF933TRJ_H3K36me3  ENCFF933TRJ H3K36me3    Data format 
     ENCFF935SFW_small_RNA-seq  ENCFF935SFW small_RNA-seq    Data format 
     ENCFF936ABR_polyA_plus_RNA-seq  ENCFF936ABR polyA_plus_RNA-seq    Data format 
     ENCFF937XOL_H3K4me1  ENCFF937XOL H3K4me1    Data format 
     ENCFF942BWN_H3K4me2  ENCFF942BWN H3K4me2    Data format 
     ENCFF948JMU_H3K18ac  ENCFF948JMU H3K18ac    Data format 
     ENCFF970HXE_H2BK5ac  ENCFF970HXE H2BK5ac    Data format 
     ENCFF982ZEV_polyA_plus_RNA-seq  ENCFF982ZEV polyA_plus_RNA-seq    Data format 
     ENCFF995JBU_H3K4me3  ENCFF995JBU H3K4me3    Data format 
    
Metadata:
Assay:WGBS
OutputType:signal
Sample:mesenchymal_stem_cell
genome:hg38
Data schema/format description and download
Assembly: Human Dec. 2013 (GRCh38/hg38)

Vizhub @ Wash U built this track, and Roadmap Epigenomics Consortium is responsible for its contents.

Description

The track files were processed and hosted by ENCODE project.

This track displays the genomic maps based on the sample type. Data were generated using various assay methods for the Roadmap project.

Display conventions

This track displays read density data in form of wiggle plots. Number of aligned reads is counted at each base pair, and a summarized value is computed for each 20 bp interval for display. The subtracks can be displayed and configured individually. See instructions .

Methods

Experimental protocols:

Protocols are located at the bottom of each experiment page. The list of the experiments can be found here: ChIP-seq   polyA plus RNA-seq   microRNA-seq   small RNA-seq   total RNA-seq   DNase   WGBS .

Pipeline overview: follow this link for pipeline overview.

Credits

These data were generated in the following labs which are listed in alphabetical order:

Bing Ren, UCSD
Bradley Bernstein, Broad Institute
Joe Ecker Lab, Salk Institute for Biological Studies
John Stamatoyannopoulos Lab, University of Washington
Joseph Costello, UCSF